AxonDeepSeg Quality Assessment Report
Generated: {{ report_date }}
Sample: {{ sample_id }}
Version: {{ software_version }}
{% for section_name, _ in sections.items() %}
{{ section_name }}
{% endfor %}
Single Axon Viewer
{% for item in items %} {% if item.type == "plot" %}
{% elif item.type == "image" %}
{% elif item.type == "segmented" %}
{% elif item.type == "text" %}
{% endif %} {% endfor %}
{% endfor %}
{{ item.html|safe }}
Segmentation Visualization
Segmented image
Press and hold 'T' to view original image
{{ item.content }}
{% elif item.type == "stats" %}
{% for stat in item.stats %}
{% endfor %}
{% elif item.type == "histogram_viewer" %}
{{ stat.value }}
{{ stat.label }}
{% if stat.trend %}
vs expected:
{{ stat.trend_value }}
{% endif %}
Distribution Histograms
Select Metric
{% for histogram in item.histograms %}
{{ histogram.name }}
{% endfor %}
Select a metric to view histogram
Single Axon Inspection
Use this tool to examine individual axons in detail. Navigate using the
controls or keyboard shortcuts. Press and hold 'T' to temporarily view
the original axon image.
Axon 0 of
0
Keyboard Shortcuts
Previous Axon
←
Next Axon
→
Show Original (hold)
T
Mark as Good (Green)
1
Needs Correction (Yellow)
2
Mark for Deletion (Red)
3
Clear Flag
0
Axon ID
-
Diameter (µm)
-
-
Myelin Thickness (µm)
-
-
g-ratio
-
-
Flag Status
None
Flagged Axons
| Axon ID | Status | Diameter (µm) | g-ratio | Actions |
|---|