.gitignore
.readthedocs.yml
CHANGELOG.md
CONTRIBUTING.rst
LICENSE
MANIFEST.ini
README.md
custom_matplotlibrc
install_ads
install_ads.bat
pyproject.toml
pytest.ini
tox.ini
.github/pull_request_template.md
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/config.yml
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/pipy_install_tests.yaml
.github/workflows/run_tests.yaml
AxonDeepSeg/__init__.py
AxonDeepSeg/ads_utils.py
AxonDeepSeg/apply_model.py
AxonDeepSeg/download_model.py
AxonDeepSeg/download_tests.py
AxonDeepSeg/integrity_test.py
AxonDeepSeg/logo_ads-alpha.png
AxonDeepSeg/logo_ads-alpha_small.png
AxonDeepSeg/model_cards.yaml
AxonDeepSeg/params.py
AxonDeepSeg/postprocessing.py
AxonDeepSeg/segment.py
AxonDeepSeg/version.txt
AxonDeepSeg.egg-info/PKG-INFO
AxonDeepSeg.egg-info/SOURCES.txt
AxonDeepSeg.egg-info/dependency_links.txt
AxonDeepSeg.egg-info/entry_points.txt
AxonDeepSeg.egg-info/requires.txt
AxonDeepSeg.egg-info/top_level.txt
AxonDeepSeg/ads_napari/Settings_menu_ui.ui
AxonDeepSeg/ads_napari/__init__.py
AxonDeepSeg/ads_napari/_widget.py
AxonDeepSeg/ads_napari/napari.yaml
AxonDeepSeg/ads_napari/settings_menu_ui.py
AxonDeepSeg/morphometrics/__init__.py
AxonDeepSeg/morphometrics/aggregate.py
AxonDeepSeg/morphometrics/compute_morphometrics.py
AxonDeepSeg/morphometrics/launch_morphometrics_computation.py
AxonDeepSeg/qa/__init__.py
AxonDeepSeg/qa/custom_matplotlibrc
AxonDeepSeg/qa/generate_report_demo.py
AxonDeepSeg/qa/metrics_qa.py
AxonDeepSeg/qa/report_template.html
AxonDeepSeg/testing/__init__.py
AxonDeepSeg/testing/launch_performance_metrics.py
AxonDeepSeg/testing/segmentation_scoring.py
AxonDeepSeg/visualization/__init__.py
AxonDeepSeg/visualization/colorization.py
AxonDeepSeg/visualization/merge_masks.py
AxonDeepSeg/visualization/simulate_axons.py
docs/Makefile
docs/make.bat
docs/source/CHANGELOG.md
docs/source/conf.py
docs/source/documentation.rst
docs/source/index.rst
docs/source/license_contributors.rst
docs/source/requirements.txt
docs/source/_extensions/__init__.py
docs/source/_extensions/model_cards_ext.py
docs/source/_static/.gitkeep
docs/source/_static/logo_ads-alpha.png
docs/source/_static/logo_ads-alpha.svg
docs/source/_static/logo_ads.pdf
docs/source/_static/logo_ads.png
docs/source/_static/css/custom.css
docs/source/_templates/.gitkeep
test/test_ads_utils.py
test/test_apply_model.py
test/test_download_models.py
test/test_download_tests.py
test/test_integrity_test.py
test/test_model_cards.py
test/test_params.py
test/test_postprocessing.py
test/test_segment.py
test/ads_napari/__init__.py
test/ads_napari/test_widget.py
test/morphometrics/test_aggregate.py
test/morphometrics/test_compute_morphometrics.py
test/morphometrics/test_launch_morphometrics_computation.py
test/testing/test_launch_performance_metrics.py
test/testing/test_segmentation_scoring.py
test/visualization/test_colorization.py
test/visualization/test_merge_masks.py
test/visualization/test_simulate_axons.py