Other software to look at and maybe recommend to users:

 * [http://www.pytables.org/moin PyTables] - This is looking really
 promising for dataset storage and experiment logging... This might
 actually be useful for large data sets.
 * [http://matplotlib.sourceforge.net/ MatPlotLib] - visualization tools
 (plot curves interactively, like matlab's figure window)
 * [http://www.pythonware.com/products/pil/ PIL] - Python Image Library:
 write your matrices out in png! (Kinda a weird recommendation, I think)
 * [http://www.logilab.org/857 pylint] - Syntax checker for python to
 help beautify your code. (We'd be hypocrites to recommend this :)
 * [http://www.winpdb.org/ Winpdb] - A Platform Independent Python
 Debugger. (Except it doesn't really help you debug Theano graphs)
 * [http://wiki.python.org/moin/IntegratedDevelopmentEnvironments Python Integrated Development Environments] - for all your coding needs

