pandas
pandas-stubs
scikit-learn
scikit-allel
Pgenlib
matplotlib
joblib
tqdm
plotly
plotly_express
nbformat
adjustText
zstandard
pygrgl

[:python_version < "3.10"]
numpy<2

[:python_version < "3.14"]
polars

[:python_version >= "3.10"]
numpy

[:python_version >= "3.14"]
polars-lts-cpu

[benchmark]
pytest
pytest-benchmark
memory_profiler
pandas-plink
pysam
scikit-allel
sgkit[plink]
hail
pysnptools
Pgenlib
cyvcf2
plinkio
PyVCF3

[demos]
jupyterlab
seaborn

[docs]
pdoc
torch

[gpu]
torch

[tests]
tox
pytest
pytest-cov
