CHANGELOG
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
doc/Makefile
doc/make.bat
doc/build/doctrees/PBassign.doctree
doc/build/doctrees/PBclust.doctree
doc/build/doctrees/PBcount.doctree
doc/build/doctrees/PBstat.doctree
doc/build/doctrees/api_cookbook.doctree
doc/build/doctrees/api_reference.doctree
doc/build/doctrees/environment.pickle
doc/build/doctrees/index.doctree
doc/build/doctrees/installation.doctree
doc/build/doctrees/intro_PB.doctree
doc/build/doctrees/utilization.doctree
doc/build/doctrees/notebooks/Assignement.doctree
doc/build/doctrees/notebooks/Deformability.doctree
doc/build/doctrees/notebooks/WritePB.doctree
doc/build/doctrees/pages/PB.doctree
doc/build/doctrees/pages/analysis.doctree
doc/build/doctrees/pages/assign.doctree
doc/build/doctrees/pages/demo.doctree
doc/build/doctrees/pages/io.doctree
doc/build/doctrees/pages/pbxplore.doctree
doc/build/doctrees/pages/structure.doctree
doc/build/html/.buildinfo
doc/build/html/PBassign.html
doc/build/html/PBclust.html
doc/build/html/PBcount.html
doc/build/html/PBstat.html
doc/build/html/api_cookbook.html
doc/build/html/api_reference.html
doc/build/html/genindex.html
doc/build/html/index.html
doc/build/html/installation.html
doc/build/html/intro_PB.html
doc/build/html/objects.inv
doc/build/html/py-modindex.html
doc/build/html/search.html
doc/build/html/searchindex.js
doc/build/html/utilization.html
doc/build/html/_images/1AY7_B.jpg
doc/build/html/_images/Neq.jpg
doc/build/html/_images/PBs.jpg
doc/build/html/_images/psi_md_traj_all.PB.Neq.jpg
doc/build/html/_images/psi_md_traj_all.PB.logo.jpg
doc/build/html/_images/psi_md_traj_all.PB.map.jpg
doc/build/html/_images/psi_md_traj_all_frame.PB.Neq.15-42.jpg
doc/build/html/_images/psi_md_traj_all_frame.PB.logo.15-42.jpg
doc/build/html/_images/psi_md_traj_all_frame.PB.map.15-42.jpg
doc/build/html/_modules/index.html
doc/build/html/_modules/pbxplore/PB.html
doc/build/html/_modules/pbxplore/assignment.html
doc/build/html/_modules/pbxplore/demo.html
doc/build/html/_modules/pbxplore/analysis/compare.html
doc/build/html/_modules/pbxplore/analysis/count.html
doc/build/html/_modules/pbxplore/analysis/neq.html
doc/build/html/_modules/pbxplore/analysis/utils.html
doc/build/html/_modules/pbxplore/analysis/visualization.html
doc/build/html/_modules/pbxplore/io/fasta.html
doc/build/html/_modules/pbxplore/io/write.html
doc/build/html/_modules/pbxplore/structure/PDB.html
doc/build/html/_modules/pbxplore/structure/loader.html
doc/build/html/_modules/pbxplore/structure/structure.html
doc/build/html/_sources/PBassign.txt
doc/build/html/_sources/PBclust.txt
doc/build/html/_sources/PBcount.txt
doc/build/html/_sources/PBstat.txt
doc/build/html/_sources/api_cookbook.txt
doc/build/html/_sources/api_reference.txt
doc/build/html/_sources/index.txt
doc/build/html/_sources/installation.txt
doc/build/html/_sources/intro_PB.txt
doc/build/html/_sources/utilization.txt
doc/build/html/_sources/notebooks/Assignement.txt
doc/build/html/_sources/notebooks/Deformability.txt
doc/build/html/_sources/notebooks/WritePB.txt
doc/build/html/_sources/pages/PB.txt
doc/build/html/_sources/pages/analysis.txt
doc/build/html/_sources/pages/assign.txt
doc/build/html/_sources/pages/demo.txt
doc/build/html/_sources/pages/io.txt
doc/build/html/_sources/pages/pbxplore.txt
doc/build/html/_sources/pages/structure.txt
doc/build/html/_static/ajax-loader.gif
doc/build/html/_static/basic.css
doc/build/html/_static/comment-bright.png
doc/build/html/_static/comment-close.png
doc/build/html/_static/comment.png
doc/build/html/_static/doctools.js
doc/build/html/_static/down-pressed.png
doc/build/html/_static/down.png
doc/build/html/_static/empty
doc/build/html/_static/file.png
doc/build/html/_static/jquery-1.11.1.js
doc/build/html/_static/jquery.js
doc/build/html/_static/minus.png
doc/build/html/_static/plus.png
doc/build/html/_static/pygments.css
doc/build/html/_static/searchtools.js
doc/build/html/_static/underscore-1.3.1.js
doc/build/html/_static/underscore.js
doc/build/html/_static/up-pressed.png
doc/build/html/_static/up.png
doc/build/html/_static/websupport.js
doc/build/html/_static/css/badge_only.css
doc/build/html/_static/css/theme.css
doc/build/html/_static/fonts/Inconsolata-Bold.ttf
doc/build/html/_static/fonts/Inconsolata-Regular.ttf
doc/build/html/_static/fonts/Lato-Bold.ttf
doc/build/html/_static/fonts/Lato-Regular.ttf
doc/build/html/_static/fonts/RobotoSlab-Bold.ttf
doc/build/html/_static/fonts/RobotoSlab-Regular.ttf
doc/build/html/_static/fonts/fontawesome-webfont.eot
doc/build/html/_static/fonts/fontawesome-webfont.svg
doc/build/html/_static/fonts/fontawesome-webfont.ttf
doc/build/html/_static/fonts/fontawesome-webfont.woff
doc/build/html/_static/js/modernizr.min.js
doc/build/html/_static/js/theme.js
doc/build/html/notebooks/Assignement.html
doc/build/html/notebooks/Assignement.ipynb
doc/build/html/notebooks/Assignement_.html
doc/build/html/notebooks/Deformability.html
doc/build/html/notebooks/Deformability.ipynb
doc/build/html/notebooks/Deformability_.html
doc/build/html/notebooks/WritePB.html
doc/build/html/notebooks/WritePB.ipynb
doc/build/html/notebooks/WritePB_.html
doc/build/html/pages/PB.html
doc/build/html/pages/analysis.html
doc/build/html/pages/assign.html
doc/build/html/pages/demo.html
doc/build/html/pages/io.html
doc/build/html/pages/pbxplore.html
doc/build/html/pages/structure.html
doc/source/Fontmap.GS
doc/source/PBassign.rst
doc/source/PBcount.rst
doc/source/PBstat.rst
doc/source/api_cookbook.rst
doc/source/api_reference.rst
doc/source/build.sh
doc/source/conf.py
doc/source/index.rst
doc/source/installation.rst
doc/source/intro_PB.rst
doc/source/maintenance.rst
doc/source/pandoc_fix_img.py
doc/source/utilization.rst
doc/source/_static/empty
doc/source/img/1AY7_B.jpg
doc/source/img/Neq.jpg
doc/source/img/PBs.jpg
doc/source/img/psi_md_traj_all.PB.Neq.jpg
doc/source/img/psi_md_traj_all.PB.logo.jpg
doc/source/img/psi_md_traj_all.PB.map.jpg
doc/source/img/psi_md_traj_all_frame.PB.Neq.15-42.jpg
doc/source/img/psi_md_traj_all_frame.PB.logo.15-42.jpg
doc/source/img/psi_md_traj_all_frame.PB.map.15-42.jpg
doc/source/notebooks/Assignement.ipynb
doc/source/notebooks/Assignement.rst
doc/source/notebooks/Deformability.ipynb
doc/source/notebooks/Deformability.rst
doc/source/notebooks/WritePB.ipynb
doc/source/notebooks/WritePB.rst
doc/source/pages/PB.rst
doc/source/pages/analysis.rst
doc/source/pages/assign.rst
doc/source/pages/demo.rst
doc/source/pages/io.rst
doc/source/pages/pbxplore.rst
doc/source/pages/structure.rst
pbxplore/PB.py
pbxplore/PBs_substitution_matrix.dat
pbxplore/__init__.py
pbxplore/assignment.py
pbxplore.egg-info/PKG-INFO
pbxplore.egg-info/SOURCES.txt
pbxplore.egg-info/dependency_links.txt
pbxplore.egg-info/entry_points.txt
pbxplore.egg-info/pbr.json
pbxplore.egg-info/requires.txt
pbxplore.egg-info/top_level.txt
pbxplore/analysis/__init__.py
pbxplore/analysis/compare.py
pbxplore/analysis/count.py
pbxplore/analysis/neq.py
pbxplore/analysis/utils.py
pbxplore/analysis/visualization.py
pbxplore/demo/__init__.py
pbxplore/io/__init__.py
pbxplore/io/fasta.py
pbxplore/io/write.py
pbxplore/scripts/PBassign.py
pbxplore/scripts/PBcount.py
pbxplore/scripts/PBdata.py
pbxplore/scripts/PBstat.py
pbxplore/scripts/__init__.py
pbxplore/structure/PDB.py
pbxplore/structure/__init__.py
pbxplore/structure/loader.py
pbxplore/structure/structure.py
pbxplore/tests/__init__.py
pbxplore/tests/test_functions.py
pbxplore/tests/test_regression.py
pbxplore/tests/test_data/.barstar_md_traj.xtc_offsets.npz
pbxplore/tests/test_data/1AY7.cif.gz
pbxplore/tests/test_data/1AY7.cif.gz.PB.fasta
pbxplore/tests/test_data/1AY7.pdb
pbxplore/tests/test_data/1AY7.pdb.PB.fasta
pbxplore/tests/test_data/1AY7.pdb.gz
pbxplore/tests/test_data/1BTA.cif.gz
pbxplore/tests/test_data/1BTA.cif.gz.PB.fasta
pbxplore/tests/test_data/1BTA.pdb
pbxplore/tests/test_data/1BTA.pdb.PB.fasta
pbxplore/tests/test_data/2LFU.cif.gz
pbxplore/tests/test_data/2LFU.cif.gz.PB.fasta
pbxplore/tests/test_data/2LFU.pdb
pbxplore/tests/test_data/2LFU.pdb.PB.fasta
pbxplore/tests/test_data/3ICH.cif.gz
pbxplore/tests/test_data/3ICH.cif.gz.PB.fasta
pbxplore/tests/test_data/3ICH.pdb
pbxplore/tests/test_data/3ICH.pdb.PB.fasta
pbxplore/tests/test_data/all.cif.gz.PB.fasta
pbxplore/tests/test_data/all.pdb.PB.fasta
pbxplore/tests/test_data/barstar_md_traj.PB.fasta
pbxplore/tests/test_data/barstar_md_traj.gro
pbxplore/tests/test_data/barstar_md_traj.xtc
pbxplore/tests/test_data/count_multi1.PB.count
pbxplore/tests/test_data/count_multi1.PB.fasta
pbxplore/tests/test_data/count_multi123.PB.Neq
pbxplore/tests/test_data/count_multi123.PB.Neq.10-30
pbxplore/tests/test_data/count_multi123.PB.count
pbxplore/tests/test_data/count_multi1_first-20.PB.count
pbxplore/tests/test_data/count_multi1_first20.PB.count
pbxplore/tests/test_data/count_multi2.PB.fasta
pbxplore/tests/test_data/count_multi3.PB.fasta
pbxplore/tests/test_data/count_single1.PB.count
pbxplore/tests/test_data/count_single1.PB.fasta
pbxplore/tests/test_data/count_single123.PB.Neq
pbxplore/tests/test_data/count_single123.PB.count
pbxplore/tests/test_data/count_single2.PB.fasta
pbxplore/tests/test_data/count_single3.PB.fasta
pbxplore/tests/test_data/psi_md_traj_1.PB.compare.fasta
pbxplore/tests/test_data/psi_md_traj_1.PB.fasta
pbxplore/tests/test_data/psi_md_traj_2.PB.fasta
pbxplore/tests/test_data/psi_md_traj_3.PB.fasta
pbxplore/tests/test_data/psi_md_traj_all.PB.compare.fasta
pbxplore/tests/test_data/psi_md_traj_all.PB.fasta
pbxplore/tests/test_data/test_fail.pdb
pbxplore/tests/test_data/test_fail.pdb.PB.fasta