MANIFEST.in
README.rst
pyproject.toml
setup.py
utrcalling/__init__.py
utrcalling/_metadata.py
utrcalling.egg-info/PKG-INFO
utrcalling.egg-info/SOURCES.txt
utrcalling.egg-info/dependency_links.txt
utrcalling.egg-info/entry_points.txt
utrcalling.egg-info/requires.txt
utrcalling.egg-info/top_level.txt
utrcalling/core/__init__.py
utrcalling/core/anndata_processing.py
utrcalling/core/core.py
utrcalling/core/helpers.py
utrcalling/core/module_log.py
utrcalling/core/peak_calling.py
utrcalling/core/peak_calling_anndata.py
utrcalling/core/protocols.py
utrcalling/core/utr_mapping.py
utrcalling/core/utr_reference.py
utrcalling/tests/__init__.py
utrcalling/tests/test_anndata_processing.py
utrcalling/tests/test_case.py
utrcalling/tests/test_compute_mean_utr_sizes.py
utrcalling/tests/test_core.py
utrcalling/tests/test_package_details.py
utrcalling/tests/test_peak_calling.py
utrcalling/tests/test_protocols.py
utrcalling/tests/test_utr_mapping.py
utrcalling/tests/test_utr_reference.py
utrcalling/tests/test_data/anndata_test.h5ad
utrcalling/tests/test_data/capseq_test_sorted.bam
utrcalling/tests/test_data/capseq_test_sorted.bam.bai
utrcalling/tests/test_data/generate_test_bam_capseq.py
utrcalling/tests/test_data/generate_test_bam_data.py
utrcalling/tests/test_data/generate_test_bam_smartseq3.py
utrcalling/tests/test_data/smartseq3_anno.csv
utrcalling/tests/test_data/smartseq3_test_sorted.bam
utrcalling/tests/test_data/smartseq3_test_sorted.bam.bai
utrcalling/tests/test_data/test_CapPhospho_genome_102_coordsort.bam
utrcalling/tests/test_data/test_CapPhospho_genome_102_coordsort.bam.bai
utrcalling/tests/test_data/test_UTR_reference.pkl
utrcalling/tests/test_data/test_UTR_reference_5prime.pkl
utrcalling/tests/test_data/test_UTRoldNSCgenome_bwt2_102_sort.bam
utrcalling/tests/test_data/test_UTRoldNSCgenome_bwt2_102_sort.bam.bai
utrcalling/tests/test_data/test_UTRoldNSCgenome_bwt2_102_sort_OLD.bam
utrcalling/tests/test_data/test_UTRoldNSCgenome_bwt2_102_sort_OLD.bam.bai
utrcalling/tests/test_data/test_UTRoldNSCgenome_bwt2_102_sort_dup_umi.bam
utrcalling/tests/test_data/test_UTRyoungNSCgenome_bwt2_102_sort.bam
utrcalling/tests/test_data/test_UTRyoungNSCgenome_bwt2_102_sort.bam.bai
utrcalling/tests/test_data/test_mus_musculus_GRCm38_102.gtf
utrcalling/tests/test_data/test_mus_musculus_GRCm38_102.gtf.gz
utrcalling/tests/test_data/test_mus_musculus_GRCm38_102_5prime.gtf.gz
utrcalling/tests/test_data/vivo_anno.csv
utrcalling/tools/__init__.py
utrcalling/tools/call_peaks.py
utrcalling/tools/call_peaks_different_bandwidths.py
utrcalling/tools/check_distance_to_pas.py
utrcalling/tools/compute_mean_utr_sizes.py
utrcalling/tools/concatenate_experiments.py
utrcalling/tools/counts_to_percentages.py
utrcalling/tools/estimate_best_bandwidth.py
utrcalling/tools/generate_utr_names.py
utrcalling/tools/prepare_reference_and_map_reads.py
utrcalling/tools/remove_peaks_below_count_threshold.py
utrcalling/tools/run.py
utrcalling/tools/select_alternative_transcription_events.py
utrcalling/tools/split_train_test.py
utrcalling/tools/subset_experiments.py