Metadata-Version: 1.1
Name: eke.study
Version: 1.1.15
Summary: Study and protocol information for the EDRN Knowledge Environment
Home-page: https://github.com/EDRN/eke.study
Author: Sean Kelly
Author-email: sean.kelly@jpl.nasa.gov
License: ALv2
Description: *********
        eke.study
        *********
        
        This product, ``eke.study``, provides display and RDF ingest of participating
        studies and medical protocols that are being executed, will be executed, or
        have been executed by the Early Detection Research Network (EDRN_).  Studies
        and protocols are the major research efforts (and therefore funded entities)
        that EDRN researchers pursue, and therefore are a vital component of the EDRN
        Knowledge Environment (EKE_).  EDRN uses the EKE to make it easy to discover,
        share, search for, and retrieve all of EDRN's collective knowledge, including
        cancers and other diseases, biomarkers, specimens, participants, staff, and-as
        in the case of this product-studies and protocols.
        
        Although intended for the EDRN public portal, it can be installed in any
        Plone_ compatible site.
        
        This software is developed by the `EDRN Informatics Center`_  at JPL_,
        operated by the California Institute of Technology, for NCI_.
        
        *Note for Developers*: Tests for this package do not work correctly under the
        RoadRunner.  Use the standard instance test runner instead.  (It's not the
        fault of the RoadRunner; it has to do with co-dependency of this project with
        eke.biomarker).
        
        
        .. References:
        .. _EDRN Informatics Center: http://cancer.jpl.nasa.gov/
        .. _EDRN: http://edrn.nci.nih.gov/
        .. _EKE: http://cancer.jpl.nasa.gov/documents/applications/knowledge-environment
        .. _JPL: http://www.jpl.nasa.gov/
        .. _NCI: http://cancer.gov/
        .. _Plone: http://plone.org/
        
        
        Installation
        ============
        
        Use Buildout_ with the plone.recipe.zope2instance recipe.
        
        • Add ``eke.study`` to the list of eggs to install, e.g.::
         
            [buildout]
            ...
            eggs =
                ...
                eke.study
                
        • Re-run buildout, e.g. with::
          
            % ./bin/buildout
                
        You can skip the ZCML slug if you are going to explicitly include the package
        from another package's configure.zcml file.
        
        .. References:
        .. _Buildout: http://www.buildout.org/
        
        
        Changelog
        =========
        
        A retrospective of the various releases this component has had, what's been
        changed, what's been fixed, and so forth, follows.  For issue IDs mentioned
        below, see the issue tracker at https://oodt.jpl.nasa.gov/jira/browse/CA
        
        
        1.1.15 — Werk Werk
        ------------------
        
        • CA-1436 - Collaborative Group Workspaces - Separate Projects and Protocols
        • CA-1437 - Portal upgrade clears "project" flag
        
        
        1.1.14 — Bad Data
        -----------------
        
        • CA-1430 - Portal cannot ingest protocol #0
        
        
        1.1.13 — Bug Fixes
        ------------------
        
        • CA-1300
        • CA-1292
        • CA-1302
        
        
        1.1.12 — I Had Some Chicken; Pass Me the FLOSS
        ----------------------------------------------
        
        • First official release as free/libre/open source software.
        
        
        1.1.11 — Let's Talk
        -------------------
        
        • CA-1229 - Discussion re-enabled after upgrade
        
        
        1.1.10 — Non-EDRN Protocols and Non-EDRN Protocols
        --------------------------------------------------
        
        • CA-1122 - Indicate if Protocol is not an EDRN Protocol
        • CA-1148 - Remove description from Protocols it's duplicated in the abstract
        
        
        1.1.9 — Closing Security Holes
        ------------------------------
        
        • Made compatible with Plone 4.3.
        
        
        1.1.8 — More Upgrades
        ---------------------
        
        • Made compatible with Plone 4.2.4
        
        
        1.1.7 — Unicode, Again
        ----------------------
        
        • CA-1005 - Non-US-ASCII characters in protocol title causes catalog rebuild
          to fail.
        
        
        1.1.6 — Upgrades
        ----------------
        
        Made compatible with Plone 4.1.5 and eea.facetednavigation 4.5.  Also,
        addressed the following issues:
        
        • CA-965 - Log the upgrade process
        • CA-978 - eke.study can't handle RDF with duplicate protocol titles
        
        
        1.1.5 — Test Support
        --------------------
        
        This release includes:
        
        * Depending on just Plone the framework instead of Plone the application.
        * Working around null dataset names and investigator names.
        
        
        1.1.4 — Permanently adds 15 resilience to a shoulder slot item
        --------------------------------------------------------------
        
        This release makes functional tests even more resilient.
        
        
        1.1.3 — Adds 40 Resilience Rating
        ---------------------------------
        
        This release makes functional tests more resilient.
        
        
        1.1.2 — Yay Team!
        -----------------
        
        This release expands on team projects, adding an index for projects, badging
        of projects, and a vocabulary to enumerate them.  Also, during RDF ingest, it
        connects protocols to collaborative groups.
        
        
        1.1.1 — Upgrade Cleanup
        -----------------------
         
        This release updates the GenericSetup profile to 4, provides upgrade steps to
        that profile, and makes the testing and development harness depend on "trunk"
        level of other eggs instead of on released versions of those eggs.  Also, it
        removes in incompatible profile dependency.
        
        
        1.1.0 — Plone 4
        ---------------
        
        This release makes eke.study compatible with Plone 4.
        
        
        1.0.2 — A Mixed Bag
        -------------------
        
        This release fixes a couple of issues:
        
        * CA-583 - Add PDFs to Protocols
        * CA-620 - Locks appear on biomarkers listed under a protocol incorrectly
          (implementation)
        
        
        1.0.1 — Protocol IDs
        --------------------
        
        This release addresses just one tiny little issue:
        
        * CA-659 - Add protocol ID to protocol view
        
        You can find the issue tracker at https://oodt.jpl.nasa.gov/jira/browse/CA
        
        
        1.0.0 — Prime Time
        ------------------
        
        This release addresses a number of issues 
        that make this component (and some of its
        selected counterparts) "prime time" for
        the operational NCI portal. 
        
        This release addresses the following issues:
        
        * CA-528 Automatic periodic ingest of RDF
        
        You can find the issue tracker at https://oodt.jpl.nasa.gov/jira/browse/CA
        
        
        0.0.3 — Filler Text
        -------------------
        
        This release addresses the following issues:
        
        * CA-586 - Show alternative text (if abstract text is empty) on protocol list
          page
        * CA-604 - Add PI to Protocol List
        
        You can find the issue tracker at https://oodt.jpl.nasa.gov/jira/browse/CA
        
        
        0.0.2 — To Be Named At Release Time
        -----------------------------------
        
        This release addresses the following issues:
        
        * https://oodt.jpl.nasa.gov/jira/browse/CA-551 - Add lock icon to biomarkers
          and science data that are "secure" to protocol pages
        * https://oodt.jpl.nasa.gov/jira/browse/CA-523 - Create search indexes; in
          particular, searches are enabled for abbreviated protocol name, biomarker
          names, PI names, collaborative group text, dataset names (courtesy of
          updates to ``eke.ecas``), and involved investigator sites.
        
        
        0.0.1 — HTML Formatting
        -----------------------
        
        The following issue is the sole issue addressed in this release:
        
        * http://oodt.jpl.nasa.gov/jira/browse/CA-472 - Protocols and other items seem
          to still have encoded ASCII characters in the titles
        
        
        Release 0.0.0
        -------------
        
        Beta release. This release is destined to become the FCS_.
        
        
        .. References:
        .. _FCS: http://en.wikipedia.org/wiki/Development_stage
        
        
Keywords: web zope plone edrn cancer biomarkers eke study protocol
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Web Environment
Classifier: Framework :: Plone
Classifier: Intended Audience :: Healthcare Industry
Classifier: Intended Audience :: Science/Research
Classifier: License :: Other/Proprietary License
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Programming Language :: Python
Classifier: Topic :: Internet :: WWW/HTTP
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Software Development :: Libraries :: Python Modules
