MANIFEST.in
setup.py
MDTraj/__init__.py
MDTraj/__init__.pyc
MDTraj/arc.pyc
MDTraj/compatibility.pyc
MDTraj/hdf5.pyc
MDTraj/io.py
MDTraj/io.pyc
MDTraj/lh5.pyc
MDTraj/mdcrd.pyc
MDTraj/netcdf.pyc
MDTraj/openmmxml.pyc
MDTraj/registry.pyc
MDTraj/topology.pyc
MDTraj/trajectory.pyc
MDTraj/version.py
MDTraj/version.pyc
MDTraj/core/__init__.py
MDTraj/core/element.py
MDTraj/core/topology.py
MDTraj/core/trajectory.py
MDTraj/formats/__init__.py
MDTraj/formats/arc.py
MDTraj/formats/hdf5.py
MDTraj/formats/lh5.py
MDTraj/formats/mdcrd.py
MDTraj/formats/netcdf.py
MDTraj/formats/openmmxml.py
MDTraj/formats/prmtop.py
MDTraj/formats/registry.py
MDTraj/formats/binpos/binpos.pyx
MDTraj/formats/binpos/binposlib.pxd
MDTraj/formats/binpos/include/binposplugin.h
MDTraj/formats/binpos/include/largefiles.h
MDTraj/formats/binpos/include/molfile_plugin.h
MDTraj/formats/binpos/include/vmdplugin.h
MDTraj/formats/binpos/src/binposplugin.c
MDTraj/formats/dcd/dcd.pyx
MDTraj/formats/dcd/dcdlib.pxd
MDTraj/formats/dcd/include/dcdplugin.h
MDTraj/formats/dcd/include/endianswap.h
MDTraj/formats/dcd/include/fastio.h
MDTraj/formats/dcd/include/largefiles.h
MDTraj/formats/dcd/include/molfile_plugin.h
MDTraj/formats/dcd/include/vmdplugin.h
MDTraj/formats/dcd/src/dcdplugin.c
MDTraj/formats/pdb/README.md
MDTraj/formats/pdb/__init__.py
MDTraj/formats/pdb/pdbfile.py
MDTraj/formats/pdb/pdbstructure.py
MDTraj/formats/pdb/data/pdbNames.xml
MDTraj/formats/pdb/data/residues.xml
MDTraj/formats/pdb/tests/__init__.py
MDTraj/formats/pdb/tests/test_element.py
MDTraj/formats/pdb/tests/test_pdb.py
MDTraj/formats/xtc/trr.pyx
MDTraj/formats/xtc/trrlib.pxd
MDTraj/formats/xtc/xdrlib.pxd
MDTraj/formats/xtc/xtc.pyx
MDTraj/formats/xtc/include/Makefile.am
MDTraj/formats/xtc/include/Makefile.in
MDTraj/formats/xtc/include/xdrfile.h
MDTraj/formats/xtc/include/xdrfile_trr.h
MDTraj/formats/xtc/include/xdrfile_xtc.h
MDTraj/formats/xtc/src/README
MDTraj/formats/xtc/src/trr2xtc.c
MDTraj/formats/xtc/src/xdrfile.c
MDTraj/formats/xtc/src/xdrfile_c_test.c
MDTraj/formats/xtc/src/xdrfile_trr.c
MDTraj/formats/xtc/src/xdrfile_xtc.c
MDTraj/geometry/__init__.py
MDTraj/geometry/__init__.pyc
MDTraj/geometry/alignment.py
MDTraj/geometry/alignment.pyc
MDTraj/geometry/angle.py
MDTraj/geometry/angle.pyc
MDTraj/geometry/contact.py
MDTraj/geometry/contact.pyc
MDTraj/geometry/dihedral.py
MDTraj/geometry/dihedral.pyc
MDTraj/geometry/distance.py
MDTraj/geometry/distance.pyc
MDTraj/geometry/hbond.py
MDTraj/geometry/hbond.pyc
MDTraj/geometry/internal.py
MDTraj/geometry/internal.pyc
MDTraj/geometry/rg.py
MDTraj/geometry/rg.pyc
MDTraj/geometry/sasa.py
MDTraj/geometry/sasa.pyc
MDTraj/geometry/include/msvccompat.h
MDTraj/geometry/include/ssetools.h
MDTraj/geometry/src/_geometry.pyx
MDTraj/geometry/src/geometry.c
MDTraj/geometry/src/sasa.c
MDTraj/geometry/test/test_alignment.pyc
MDTraj/geometry/test/test_contact.pyc
MDTraj/geometry/test/test_dihedral.pyc
MDTraj/geometry/test/test_distance.pyc
MDTraj/geometry/test/test_geometry.pyc
MDTraj/geometry/test/test_hbonds.pyc
MDTraj/geometry/test/test_sasa.pyc
MDTraj/geometry/tests/__init__.py
MDTraj/geometry/tests/__init__.pyc
MDTraj/geometry/tests/test_alignment.py
MDTraj/geometry/tests/test_alignment.pyc
MDTraj/geometry/tests/test_contact.py
MDTraj/geometry/tests/test_contact.pyc
MDTraj/geometry/tests/test_dihedral.py
MDTraj/geometry/tests/test_dihedral.pyc
MDTraj/geometry/tests/test_distance.py
MDTraj/geometry/tests/test_distance.pyc
MDTraj/geometry/tests/test_geometry.py
MDTraj/geometry/tests/test_geometry.pyc
MDTraj/geometry/tests/test_hbonds.py
MDTraj/geometry/tests/test_hbonds.pyc
MDTraj/geometry/tests/test_sasa.py
MDTraj/geometry/tests/test_sasa.pyc
MDTraj/pdb/__init__.pyc
MDTraj/pdb/element.pyc
MDTraj/pdb/pdbfile.pyc
MDTraj/pdb/pdbstructure.pyc
MDTraj/pdb/test_pdb.pyc
MDTraj/pdb/tests/__init__.pyc
MDTraj/pdb/tests/test_element.pyc
MDTraj/pdb/tests/test_pdb.pyc
MDTraj/reporters/__init__.py
MDTraj/reporters/__init__.pyc
MDTraj/reporters/basereporter.py
MDTraj/reporters/basereporter.pyc
MDTraj/reporters/dcdreporter.py
MDTraj/reporters/dcdreporter.pyc
MDTraj/reporters/hdf5reporter.py
MDTraj/reporters/hdf5reporter.pyc
MDTraj/reporters/netcdfreporter.py
MDTraj/reporters/netcdfreporter.pyc
MDTraj/rmsd/README.md
MDTraj/rmsd/_rmsd.pyx
MDTraj/rmsd/include/msvccompat.h
MDTraj/rmsd/include/rotation.h
MDTraj/rmsd/include/sse_swizzle.h
MDTraj/rmsd/include/theobald_rmsd.h
MDTraj/rmsd/include/util.h
MDTraj/rmsd/src/center.c
MDTraj/rmsd/src/rotation.c
MDTraj/rmsd/src/theobald_rmsd.c
MDTraj/testing/__init__.py
MDTraj/testing/__init__.pyc
MDTraj/testing/docscrape.py
MDTraj/testing/docscrape.pyc
MDTraj/testing/docstrings.py
MDTraj/testing/docstrings.pyc
MDTraj/testing/nosetester.py
MDTraj/testing/nosetester.pyc
MDTraj/testing/testing.py
MDTraj/testing/testing.pyc
MDTraj/testing/reference/1bpi.pdb
MDTraj/testing/reference/1vii_sustiva_water.pdb
MDTraj/testing/reference/2EQQ.pdb
MDTraj/testing/reference/4K6Q.pdb
MDTraj/testing/reference/4waters.arc
MDTraj/testing/reference/4waters.pdb
MDTraj/testing/reference/GG-tip4pew.pdb
MDTraj/testing/reference/Rg_traj_ref.dat
MDTraj/testing/reference/alanine-dipeptide-explicit.binpos
MDTraj/testing/reference/alanine-dipeptide-explicit.pdb
MDTraj/testing/reference/alanine-dipeptide-explicit.prmtop
MDTraj/testing/reference/alanine-dipeptide-implicit.prmtop
MDTraj/testing/reference/alanine.binpos
MDTraj/testing/reference/atom_distances_traj_ref.dat
MDTraj/testing/reference/atom_pairs.dat
MDTraj/testing/reference/bpti.pdb
MDTraj/testing/reference/cc_ca.dat
MDTraj/testing/reference/cc_closest-heavy.dat
MDTraj/testing/reference/cc_closest.dat
MDTraj/testing/reference/contacts.dat
MDTraj/testing/reference/frame0.binpos
MDTraj/testing/reference/frame0.binpos.h5
MDTraj/testing/reference/frame0.dcd
MDTraj/testing/reference/frame0.dcd.h5
MDTraj/testing/reference/frame0.h5
MDTraj/testing/reference/frame0.mdcrd
MDTraj/testing/reference/frame0.mdcrdbox
MDTraj/testing/reference/frame0.nc
MDTraj/testing/reference/frame0.pdb
MDTraj/testing/reference/frame0.trr
MDTraj/testing/reference/frame0.xtc
MDTraj/testing/reference/frame0.xtc.h5
MDTraj/testing/reference/g_sas_ref.dat
MDTraj/testing/reference/legacy_msmbuilder_trj0.lh5
MDTraj/testing/reference/mdcrd.nc
MDTraj/testing/reference/multiframe.pdb
MDTraj/testing/reference/native.pdb
MDTraj/testing/reference/native2.pdb
MDTraj/testing/reference/native2.xml
MDTraj/testing/reference/nonconsecutive_resSeq.pdb
MDTraj/testing/reference/traj.h5
MDTraj/tests/__init__.py
MDTraj/tests/__init__.pyc
MDTraj/tests/test_arc.py
MDTraj/tests/test_arc.pyc
MDTraj/tests/test_binpos.py
MDTraj/tests/test_binpos.pyc
MDTraj/tests/test_compatibility.pyc
MDTraj/tests/test_dcd.py
MDTraj/tests/test_dcd.pyc
MDTraj/tests/test_element.py
MDTraj/tests/test_element.pyc
MDTraj/tests/test_hdf5.py
MDTraj/tests/test_hdf5.pyc
MDTraj/tests/test_io.py
MDTraj/tests/test_io.pyc
MDTraj/tests/test_lh5.py
MDTraj/tests/test_lh5.pyc
MDTraj/tests/test_mdconvert.py
MDTraj/tests/test_mdconvert.pyc
MDTraj/tests/test_mdcrd.py
MDTraj/tests/test_mdcrd.pyc
MDTraj/tests/test_netcdf.py
MDTraj/tests/test_netcdf.pyc
MDTraj/tests/test_prmtop.py
MDTraj/tests/test_prmtop.pyc
MDTraj/tests/test_reporter.py
MDTraj/tests/test_reporter.pyc
MDTraj/tests/test_rmsd.py
MDTraj/tests/test_rmsd.pyc
MDTraj/tests/test_topology.py
MDTraj/tests/test_topology.pyc
MDTraj/tests/test_trajectory.py
MDTraj/tests/test_trajectory.pyc
MDTraj/tests/test_trr.py
MDTraj/tests/test_trr.pyc
MDTraj/tests/test_xml.py
MDTraj/tests/test_xml.pyc
MDTraj/tests/test_xtc.py
MDTraj/tests/test_xtc.pyc
MDTraj/tests/performance/test_readwrite.py
MDTraj/utils/__init__.py
MDTraj/utils/__init__.pyc
MDTraj/utils/arrays.py
MDTraj/utils/arrays.pyc
MDTraj/utils/delay_import.py
MDTraj/utils/delay_import.pyc
MDTraj/utils/ffi.py
MDTraj/utils/ffi.pyc
MDTraj/utils/six.py
MDTraj/utils/six.pyc
MDTraj/utils/test.py
MDTraj/utils/test.pyc
MDTraj/utils/unit.pyc
MDTraj/utils/unitcell.py
MDTraj/utils/unitcell.pyc
MDTraj/utils/unit/__init__.py
MDTraj/utils/unit/__init__.pyc
MDTraj/utils/unit/basedimension.py
MDTraj/utils/unit/baseunit.py
MDTraj/utils/unit/constants.py
MDTraj/utils/unit/doctests.py
MDTraj/utils/unit/mymatrix.py
MDTraj/utils/unit/prefix.py
MDTraj/utils/unit/quantity.py
MDTraj/utils/unit/standard_dimensions.py
MDTraj/utils/unit/unit.py
MDTraj/utils/unit/unit_definitions.py
MDTraj/utils/unit/unit_math.py
MDTraj/utils/unit/unit_operators.py
examples/ala2.h5
examples/clustering.ipynb
examples/example_rmsd_benchmark.pyc
examples/hbonds.ipynb
examples/iterload.ipynb
examples/principle-components.ipynb
examples/ramachandran-plot.ipynb
examples/rmsd-benchmark.ipynb
examples/rmsd-drift.ipynb
examples/simulation-with-openmm.ipynb
examples/two-pass-clustering.ipynb
mdtraj.egg-info/PKG-INFO
mdtraj.egg-info/SOURCES.txt
mdtraj.egg-info/dependency_links.txt
mdtraj.egg-info/entry_points.txt
mdtraj.egg-info/not-zip-safe
mdtraj.egg-info/requires.txt
mdtraj.egg-info/top_level.txt
scripts/__init__.py
scripts/mdconvert.py
scripts/mdinspect.py