 target name not provided; using basename: 4qk8_cl
BACKBONE_ATOMS = ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'"]
# Atoms used to anchor base orientation per residue type
PURINE_ATOMS = ['N9', 'C8', 'C7']  # G, A
PYRIMIDINE_ATOMS = ['N1', 'C6', 'C2']  # C, U (and T)
PURINES = ['A', 'DA', 'DG', 'G']
PYRIMIDINES = ['C', 'DT', 'T', 'U']
target test_data/4qk8_cl.pdb
 mapping file not provided; using PDB basenames as alignment IDs
 # of rnastruc : 1
 rnastruc: ['4qlm_cl:4qlm_cl']
 WARNING: if any of your PDB file is missing, check mapping!
        target        model    rmsd group_name
0  4qk8_cl.pdb  4qlm_cl.pdb  12.284           
 target name not provided; using basename: 4qk8_cl
BACKBONE_ATOMS = ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'"]
# Atoms used to anchor base orientation per residue type
PURINE_ATOMS = ['N9', 'C8', 'C7']  # G, A
PYRIMIDINE_ATOMS = ['N1', 'C6', 'C2']  # C, U (and T)
PURINES = ['A', 'DA', 'DG', 'G']
PYRIMIDINES = ['C', 'DT', 'T', 'U']
Alignment records:
  4qk8_cl GU---UGCCGAAU---CCGAAAG-GU-A-CGGAGGAACCG---CUUUUUG----GGGUUAAUCUGC---AGUGA---AGCUG-----CAGUAGGGAUA-----CCUUCUG---UCCCGCACCCGACAGCUAACUCCGGAGGCAAUA-AA--GGAAGGA
  4qlm_cl -A---UCGCUGAACG--------------CGGGGGACCCA--------------GGGGGCGAAUCU-CUUCCGAA--AGGAA-----GAGUAGGGUUA-----CUCCUUCG--ACCCGAGCCCGUCAGCUAACCUCGCAAGCGUCCGAA--GGAGAA-
 Inferred selector from gapless columns.
Selector source: gapless_columns
Selector (x-line): -x---xxxxxxxx----------------xxxxxxxxxxx--------------xxxxxxxxxxxx---xxxxx---xxxxx-----xxxxxxxxxxx-----xxxxxxx---xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx-xx--xxxxxx-
target test_data/4qk8_cl.pdb
 Selected residues for 4qk8_cl: [2, 3, 4, 5, 6, 7, 8, 9, 10, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119]
 mapping file not provided; using PDB basenames as alignment IDs
 # of rnastruc : 1
 rnastruc: ['4qlm_cl:4qlm_cl']
 WARNING: if any of your PDB file is missing, check mapping!
 Selected residues for 4qlm_cl: [1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 37, 38, 39, 40, 41, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 101, 102, 103, 104, 105, 106, 107, 108]
        target        model    rmsd group_name
0  4qk8_cl.pdb  4qlm_cl.pdb  27.949           
 target name not provided; using basename: 1ehz_std
BACKBONE_ATOMS = ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'"]
# Atoms used to anchor base orientation per residue type
PURINE_ATOMS = ['N9', 'C8', 'C7']  # G, A
PYRIMIDINE_ATOMS = ['N1', 'C6', 'C2']  # C, U (and T)
PURINES = ['A', 'DA', 'DG', 'G']
PYRIMIDINES = ['C', 'DT', 'T', 'U']
target test_data/1ehz_std.pdb
 mapping file not provided; using PDB basenames as alignment IDs
 # of rnastruc : 1
 rnastruc: ['6Y2L_2_std:6Y2L_2_std']
 WARNING: if any of your PDB file is missing, check mapping!
         target           model   rmsd group_name
0  1ehz_std.pdb  6Y2L_2_std.pdb  1.776           
