AUTHORS
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
inmoose/__init__.py
inmoose.egg-info/PKG-INFO
inmoose.egg-info/SOURCES.txt
inmoose.egg-info/dependency_links.txt
inmoose.egg-info/requires.txt
inmoose.egg-info/top_level.txt
inmoose/cohort_qc/__init__.py
inmoose/cohort_qc/cohort_metric.py
inmoose/cohort_qc/qc_report.html
inmoose/cohort_qc/qc_report.py
inmoose/common_cpp/common_cpp.pyx
inmoose/common_cpp/matrix.cpp
inmoose/common_cpp/matrix.h
inmoose/consensus_clustering/__init__.py
inmoose/consensus_clustering/consensus_clustering.py
inmoose/data/airway/__init__.py
inmoose/data/airway/airway.h5ad
inmoose/data/pasilla/Dmel.BDGP5.25.62.DEXSeq.chr.gff
inmoose/data/pasilla/__init__.py
inmoose/data/pasilla/geneIDsinsubset.txt
inmoose/data/pasilla/pasilla_gene_counts.tsv
inmoose/data/pasilla/pasilla_sample_annotation.csv
inmoose/data/pasilla/treated1fb.txt
inmoose/data/pasilla/treated2fb.txt
inmoose/data/pasilla/treated3fb.txt
inmoose/data/pasilla/untreated1fb.txt
inmoose/data/pasilla/untreated2fb.txt
inmoose/data/pasilla/untreated3fb.txt
inmoose/data/pasilla/untreated4fb.txt
inmoose/deseq2/DESeqDataSet.py
inmoose/deseq2/DESeqTransform.py
inmoose/deseq2/Hmisc.py
inmoose/deseq2/__init__.py
inmoose/deseq2/core.py
inmoose/deseq2/deseq2_cpp.py
inmoose/deseq2/dispersions.py
inmoose/deseq2/estimateSizeFactors.py
inmoose/deseq2/fitNbinomGLMs.py
inmoose/deseq2/lrt.py
inmoose/deseq2/misc.py
inmoose/deseq2/outliers.py
inmoose/deseq2/parallel.py
inmoose/deseq2/plot.py
inmoose/deseq2/prior.py
inmoose/deseq2/replicates.py
inmoose/deseq2/results.py
inmoose/deseq2/vst.py
inmoose/deseq2/wald.py
inmoose/deseq2/weights.py
inmoose/diffexp/DEResults.py
inmoose/diffexp/__init__.py
inmoose/diffexp/meta.py
inmoose/diffexp/plot.py
inmoose/edgepy/DGEExact.py
inmoose/edgepy/DGEGLM.py
inmoose/edgepy/DGELRT.py
inmoose/edgepy/DGEList.py
inmoose/edgepy/__init__.py
inmoose/edgepy/addPriorCount.py
inmoose/edgepy/adjustedProfileLik.py
inmoose/edgepy/aveLogCPM.py
inmoose/edgepy/binomTest.py
inmoose/edgepy/dispCoxReid.py
inmoose/edgepy/dispCoxReidInterpolateTagwise.py
inmoose/edgepy/estimateGLMCommonDisp.py
inmoose/edgepy/estimateGLMTagwiseDisp.py
inmoose/edgepy/exactTest.py
inmoose/edgepy/exactTestBetaApprox.py
inmoose/edgepy/exactTestByDeviance.py
inmoose/edgepy/exactTestBySmallP.py
inmoose/edgepy/exactTestDoubleTail.py
inmoose/edgepy/glmFit.py
inmoose/edgepy/glmQLFit.py
inmoose/edgepy/glm_levenberg.py
inmoose/edgepy/glm_one_group.py
inmoose/edgepy/initialize_levenberg.py
inmoose/edgepy/makeCompressedMatrix.py
inmoose/edgepy/maximizeInterpolant.py
inmoose/edgepy/mglmLevenberg.py
inmoose/edgepy/mglmOneGroup.py
inmoose/edgepy/mglmOneWay.py
inmoose/edgepy/movingAverageByCol.py
inmoose/edgepy/nbdev.py
inmoose/edgepy/nbinomDeviance.py
inmoose/edgepy/predFC.py
inmoose/edgepy/q2qnbinom.py
inmoose/edgepy/residDF.py
inmoose/edgepy/splitIntoGroups.py
inmoose/edgepy/stats.py
inmoose/edgepy/systematicSubset.py
inmoose/edgepy/topTags.py
inmoose/edgepy/utils.py
inmoose/edgepy/validDGEList.py
inmoose/edgepy/edgepy_cpp/__init__.pxd
inmoose/edgepy/edgepy_cpp/edgepy_cpp.pyx
inmoose/edgepy/edgepy_cpp/interpolator.cpp
inmoose/edgepy/edgepy_cpp/interpolator.h
inmoose/edgepy/edgepy_cpp/maximize_interpolant.cpp
inmoose/edgepy/edgepy_cpp/utils.h
inmoose/limma/__init__.py
inmoose/limma/contrasts.py
inmoose/limma/decidetests.py
inmoose/limma/dups.py
inmoose/limma/ebayes.py
inmoose/limma/fitFDist.py
inmoose/limma/lmfit.py
inmoose/limma/marraylm.py
inmoose/limma/squeezeVar.py
inmoose/limma/toptable.py
inmoose/pycombat/__init__.py
inmoose/pycombat/covariates.py
inmoose/pycombat/helper_seq.py
inmoose/pycombat/pycombat_norm.py
inmoose/pycombat/pycombat_seq.py
inmoose/sim/__init__.py
inmoose/sim/splat.py
inmoose/utils/__init__.py
inmoose/utils/_stats.pyx
inmoose/utils/factor.py
inmoose/utils/format.py
inmoose/utils/linalg.py
inmoose/utils/lm.py
inmoose/utils/logging.py
inmoose/utils/splines.py
inmoose/utils/stats.py
tests/__init__.py
tests/cohort_qc/__init__.py
tests/cohort_qc/test_cohort_metric.py
tests/cohort_qc/test_qc_report.py
tests/consensus_clustering/__init__.py
tests/consensus_clustering/mocked_data_consensus_clustering.csv
tests/consensus_clustering/test_consensus_clustering.py
tests/data/__init__.py
tests/data/test_airway.py
tests/data/test_pasilla.py
tests/deseq2/__init__.py
tests/deseq2/test_DESeq.py
tests/deseq2/test_DESeqDataSet.py
tests/deseq2/test_LRT.py
tests/deseq2/test_QR.py
tests/deseq2/test_addMLE.py
tests/deseq2/test_betaFitting.py
tests/deseq2/test_collapse.py
tests/deseq2/test_dispersions.py
tests/deseq2/test_fpkm.py
tests/deseq2/test_interactions.py
tests/deseq2/test_linear_mu.py
tests/deseq2/test_methods.py
tests/deseq2/test_model_matrix.py
tests/deseq2/test_nbinomWald.py
tests/deseq2/test_optim.py
tests/deseq2/test_outlier.py
tests/deseq2/test_parallel.py
tests/deseq2/test_results.py
tests/deseq2/test_size_factor.py
tests/deseq2/test_unmix.py
tests/deseq2/test_vst.py
tests/deseq2/test_weights.py
tests/deseq2/test_zero_zero.py
tests/diffexp/__init__.py
tests/diffexp/test_DEResults.py
tests/diffexp/test_meta.py
tests/edgepy/__init__.py
tests/edgepy/test_DGEList.py
tests/edgepy/test_addPriorCount.py
tests/edgepy/test_aveLogCPM.py
tests/edgepy/test_compressMatrix.py
tests/edgepy/test_dispersion.py
tests/edgepy/test_exactTest.py
tests/edgepy/test_glm.py
tests/edgepy/test_lik.py
tests/edgepy/test_mglm.py
tests/edgepy/test_nbinomDeviance.py
tests/edgepy/test_predFC.py
tests/edgepy/test_q2qnbinom.py
tests/edgepy/test_stats.py
tests/limma/__init__.py
tests/limma/test_contrasts.py
tests/limma/test_decidetests.py
tests/limma/test_dups.py
tests/limma/test_fitFDist.py
tests/limma/test_lmFit.py
tests/limma/test_squeezeVar.py
tests/limma/test_tmixture.py
tests/pycombat/__init__.py
tests/pycombat/test_covariates.py
tests/pycombat/test_pycombat.py
tests/pycombat/test_pycombatseq.py
tests/sim/__init__.py
tests/sim/test_splat.py
tests/utils/__init__.py
tests/utils/test_factor.py
tests/utils/test_format.py
tests/utils/test_linalg.py
tests/utils/test_lm.py
tests/utils/test_splines.py