CHANGES.txt
LICENSE.txt
MANIFEST
MANIFEST.in
PKGBUILD
README.rst
distribute.sh
setup.py
SamSifter.egg-info/PKG-INFO
SamSifter.egg-info/SOURCES.txt
SamSifter.egg-info/dependency_links.txt
SamSifter.egg-info/entry_points.txt
SamSifter.egg-info/not-zip-safe
SamSifter.egg-info/requires.txt
SamSifter.egg-info/top_level.txt
bin/enrich_summary
pmdtools/__init__.py
pmdtools/pmdtools_0_50.py
pmdtools/pmdtools_0_50_mod.py
pmdtools/pmdtools_0_55.py
pmdtools/pmdtools_0_55_mod.py
samsifter/__init__.py
samsifter/samsifter.py
samsifter/version.py
samsifter/filters/__init__.py
samsifter/filters/bam_2_sam.py
samsifter/filters/calculate_pmds.py
samsifter/filters/compress.py
samsifter/filters/count_taxon_reads.py
samsifter/filters/decompress.py
samsifter/filters/filter_by_list.sh
samsifter/filters/filter_read_conservation.py
samsifter/filters/filter_read_identity.py
samsifter/filters/filter_read_list.py
samsifter/filters/filter_read_pmds.py
samsifter/filters/filter_ref_coverage.py
samsifter/filters/filter_ref_identity.py
samsifter/filters/filter_ref_list.py
samsifter/filters/filter_ref_pmds.py
samsifter/filters/filter_taxon_list.py
samsifter/filters/filter_taxon_pmds.py
samsifter/filters/filter_test.py
samsifter/filters/remove_duplicates.py
samsifter/filters/sam_2_bam.py
samsifter/filters/sort_by_coordinates.py
samsifter/filters/sort_by_names.py
samsifter/filters/tester
samsifter/gui/__init__.py
samsifter/gui/composites.py
samsifter/gui/dialogs.py
samsifter/gui/widgets.py
samsifter/models/__init__.py
samsifter/models/filter.py
samsifter/models/filter_model.py
samsifter/models/parameter.py
samsifter/models/workflow.py
samsifter/resources/__init__.py
samsifter/resources/resources.py
samsifter/resources/resources.qrc
samsifter/resources/samsifter.desktop
samsifter/resources/images/applications-other.png
samsifter/resources/images/icon.png
samsifter/resources/images/samsifter.png
samsifter/resources/images/samsifter.svg
samsifter/resources/images/view-filter.png
samsifter/resources/images/view-sort-ascending.png
samsifter/resources/images/x-office-spreadsheet.png
samsifter/stats/__init__.py
samsifter/stats/compile_stats.py
samsifter/stats/summarize_stats.py
samsifter/util/__init__.py
samsifter/util/arg_sanitation.py
samsifter/util/genetics.py
samsifter/util/sam.py
samsifter/util/serialize.py
samsifter/util/testing.py
samsifter/util/validation.py
samsifter/util/wrappers.py
samsifter/views/__init__.py
samsifter/views/delegates.py
samsifter/views/filterviews.py