%
% SEISMIC-RNA Developer Manual: Main Document
%
% ======================================================================
% 
% ©2024, the Rouskin Lab.
% 
% This file is part of SEISMIC-RNA.
% 
% SEISMIC-RNA is free software: you can redistribute it and/or modify it
% under the terms of the GNU General Public License as published by the
% Free Software Foundation, either version 3 of the License, or (at your
% option) any later version.
% 
% SEISMIC-RNA is distributed in the hope that it will be useful, but
% WITH NO WARRANTY; not even the implied warranty of MERCHANTABILITY or
% FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
% for more details.
% 
% You should have received a copy of the GNU General Public License
% along with SEISMIC-RNA. If not, see https://www.gnu.org/licenses/.
% 
% ======================================================================
%

\documentclass[12pt,letterpaper]{report}

% Distribute document among multiple subfiles.
\usepackage{subfiles}

% Set margins.
\usepackage[letterpaper,left=1in,right=1in,top=1in,bottom=1in]{geometry}

% Set the font family to Lato.
\usepackage[default]{lato}

% Prevent widow/orphan lines over the entire document.
\usepackage[defaultlines=2,all]{nowidow}

% Enable hyperlinks.
\usepackage{hyperref}

% Enable URLs.
\usepackage{url}

% Enable in-document interpretation of Python code.
\usepackage{python}

% Enable graphics.
\usepackage{graphicx}
\graphicspath{{../img}}

% Adjust positioning of graphics.
\usepackage[export]{adjustbox}

% Exclude virtual figures from lists of figures.
\usepackage{caption}

% Style the bibliography.
\usepackage{natbib}


\begin{document}


% Prevent text from running into the margins.
\sloppy


% Title page
\subfile{title}


% Table of contents
\tableofcontents
\listoffigures


% Chapters

\chapter{Clustering}
\label{cluster}

%\subfile{cluster}


% Bibliography
%\bibliographystyle{plain}
%\bibliography{refs}

\end{document}
