Demo: Running Threads on Simulated Data

Running mini_threads on simulated genomic data.

../../_images/fig_demo_threads.png — Threads demo on msprime-simulated data. Panel A: Segment age estimates using recombination-only MLE on IBD-like segments extracted from the true tree sequence. Panel B: Bayesian age posteriors incorporating mutation information. Panel C: Full Bayesian estimates with both recombination and mutation evidence. Panel D: Piecewise-constant Bayesian estimates under a demographic model.

This figure was generated by running the mini_threads implementation on data simulated with msprime. The script is at figures/fig_demo_threads.py.