Demo: Running ARGweaver on Simulated Data

Running mini_argweaver on simulated genomic data.

../../_images/fig_demo_argweaver.png — ARGweaver demo on simulated data. Panel A: MCMC trace of total tree length showing convergence. Panel B: Time discretization – logarithmically-spaced intervals providing finer resolution in the recent past. Panel C: Recoalescence probability distribution for different numbers of lineages. Panel D: Posterior distribution of total tree length after burn-in.

This figure was generated by running the mini_argweaver implementation on data simulated with msprime. The script is at figures/fig_demo_argweaver.py.