.. _tsinfer_demo:

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Demo: Running tsinfer on Simulated Data
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   *Running mini_tsinfer on simulated genomic data.*

.. figure:: /_static/figures/fig_demo_tsinfer.png
   :width: 100%
   :align: center

   **tsinfer demo on msprime-simulated data.** Panel A: Input genotype matrix from msprime (20 samples, 100 kb). Panel B: Generated ancestral haplotypes ordered by inferred age. Panel C: Inferred tree sequence edges showing the copying structure. Panel D: SFS comparison between the true and inferred tree sequences.

This figure was generated by running the ``mini_tsinfer`` implementation
on data simulated with ``msprime``. The script is at
``figures/fig_demo_tsinfer.py``.
