AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
Snakefile
requirements.txt
setup.cfg
setup.py
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/readme.rst
docs/usage.rst
prairiedog/__init__.py
prairiedog/cli.py
prairiedog/config.py
prairiedog/dgraph.py
prairiedog/dgraph_bundled.py
prairiedog/dgraph_bundled_helper.py
prairiedog/edge.py
prairiedog/errors.py
prairiedog/graph.py
prairiedog/graph_ref.py
prairiedog/gref.py
prairiedog/kmers.py
prairiedog/lemon_graph.py
prairiedog/logger.py
prairiedog/networkx_graph.py
prairiedog/node.py
prairiedog/prairiedog.py
prairiedog/pretty_hits.py
prairiedog/profiler.py
prairiedog/subgraph_ref.py
prairiedog.egg-info/PKG-INFO
prairiedog.egg-info/SOURCES.txt
prairiedog.egg-info/dependency_links.txt
prairiedog.egg-info/entry_points.txt
prairiedog.egg-info/not-zip-safe
prairiedog.egg-info/requires.txt
prairiedog.egg-info/top_level.txt
tests/15.fa
tests/172.fa
tests/ECI-2866_lcl.fasta
tests/GCA_900015695.1_ED647_contigs_genomic.fasta
tests/GCA_900015695.1_ED647_contigs_genomic_SHORTENED.fasta
tests/SRR1060582_SHORTENED.fasta
tests/SRR1106609_SHORTENED.fasta
tests/conftest.py
tests/pangenome.lemongraph
tests/public_mic_class_dataframe_test.csv
tests/test_connected.py
tests/test_dgraph.py
tests/test_dgraph_bulk.py
tests/test_graph.py
tests/test_graph_ref.py
tests/test_kmers.py
tests/test_logs.py
tests/test_prairiedog.py
tests/test_prebuilt.py
tests/test_profiler.py
tests/test_snakefile.py
tests/test_subgraph_ref.py