MANIFEST.in
README.md
requirements.txt
setup.py
cell/__init__.py
cell/bigg_models/e_coli_core.json
cell/bigg_models/iAF1260b.json
cell/compartments/__init__.py
cell/compartments/gene_expression.py
cell/compartments/growth_division.py
cell/compartments/growth_division_minimal.py
cell/compartments/injected_glc_phosphorylation.py
cell/compartments/lattice.py
cell/compartments/master.py
cell/data/__init__.py
cell/data/amino_acids.py
cell/data/knowledge_base.py
cell/data/molecular_weight.py
cell/data/nucleotides.py
cell/data/proteins.py
cell/data/spreadsheets.py
cell/data/synonyms.py
cell/data/chromosomes/__init__.py
cell/data/chromosomes/flagella_chromosome.py
cell/data/chromosomes/gfp_chromosome.py
cell/data/chromosomes/toy_chromosome.py
cell/data/flat/Escherichia_coli_str_k_12_substr_mg1655.ASM584v2.dna.chromosome.Chromosome.fa
cell/data/flat/__init__.py
cell/data/flat/covert2002_GLC_G6P_flux_bounds.tsv
cell/data/flat/covert2002_ecoli_metabolism_met_mw.tsv
cell/data/flat/covert2002_exchange_fluxes.tsv
cell/data/flat/covert2002_maintenance_biomass_fluxes.tsv
cell/data/flat/covert2002_reactions.tsv
cell/data/flat/covert2002_regulatory_proteins.tsv
cell/data/flat/covert2002_transport.tsv
cell/data/flat/lookup_conc_minimal.tsv
cell/data/flat/lookup_conc_minimal_minus_oxygen.tsv
cell/data/flat/lookup_conc_minimal_plus_amino_acids.tsv
cell/data/flat/lookup_flux_minimal.tsv
cell/data/flat/lookup_flux_minimal_minus_oxygen.tsv
cell/data/flat/lookup_flux_minimal_plus_amino_acids.tsv
cell/data/flat/media_recipes.tsv
cell/data/flat/timelines_def.tsv
cell/data/flat/wcEcoli_biomass.tsv
cell/data/flat/wcEcoli_complexationReactions.tsv
cell/data/flat/wcEcoli_environment_molecules.tsv
cell/data/flat/wcEcoli_genes.tsv
cell/data/flat/wcEcoli_proteins.tsv
cell/data/flat/wcEcoli_reactions.tsv
cell/data/flat/wcEcoli_transport_reactions.tsv
cell/data/flat/media/5X_supplement_EZ.tsv
cell/data/flat/media/GLC_G6P.tsv
cell/data/flat/media/GLC_LCT.tsv
cell/data/flat/media/M9.tsv
cell/data/flat/media/M9_GLC.tsv
cell/data/flat/media/PURE_Fuji_2014.tsv
cell/data/flat/media/PURE_Ueda_2010.tsv
cell/data/flat/media/__init__.py
cell/data/flat/media/ecoli_core_GLC.tsv
cell/data/flat/media/wcEcoli_base.tsv
cell/data/json_files/__init__.py
cell/data/json_files/kinetic_rate_laws_example.json
cell/experiments/__init__.py
cell/experiments/colony_metrics_experiment.py
cell/experiments/glucose_phosphorylation.py
cell/experiments/lattice_experiment.py
cell/experiments/mother_machine.py
cell/library/__init__.py
cell/library/cobra_fba.py
cell/library/flux_conversion.py
cell/library/kinetic_rate_laws.py
cell/library/lattice_utils.py
cell/library/look_up.py
cell/library/make_media.py
cell/library/polymerize.py
cell/library/pymunk_multibody.py
cell/library/rate_law_utilities.py
cell/library/regulation_logic.py
cell/plots/__init__.py
cell/plots/colonies.py
cell/plots/gene_expression.py
cell/plots/metabolism.py
cell/plots/multibody_physics.py
cell/plots/transport_metabolism.py
cell/processes/__init__.py
cell/processes/agent_names.py
cell/processes/antibiotic_transport.py
cell/processes/complexation.py
cell/processes/convenience_kinetics.py
cell/processes/death.py
cell/processes/degradation.py
cell/processes/derive_colony_shape.py
cell/processes/derive_concentrations.py
cell/processes/derive_counts.py
cell/processes/derive_globals.py
cell/processes/diffusion_cell_environment.py
cell/processes/diffusion_field.py
cell/processes/division_volume.py
cell/processes/glucose_phosphorylation.py
cell/processes/growth.py
cell/processes/growth_protein.py
cell/processes/injector.py
cell/processes/membrane_potential.py
cell/processes/metabolism.py
cell/processes/minimal_expression.py
cell/processes/multibody_physics.py
cell/processes/nonspatial_environment.py
cell/processes/ode_expression.py
cell/processes/transcription.py
cell/processes/translation.py
cell/reference_data/antibiotic_transport.csv
cell/reference_data/antibiotics_compartment.csv
cell/reference_data/colony_metrics.csv
cell/reference_data/convenience_kinetics.csv
cell/reference_data/flagella_expression_metabolism.csv
cell/reference_data/metabolism.csv
cell/reference_data/total_metrics.csv
cell/reference_data/transport_metabolism_experiment.csv
cell/states/__init__.py
cell/states/chromosome.py
vivarium_cell.egg-info/PKG-INFO
vivarium_cell.egg-info/SOURCES.txt
vivarium_cell.egg-info/dependency_links.txt
vivarium_cell.egg-info/entry_points.txt
vivarium_cell.egg-info/requires.txt
vivarium_cell.egg-info/top_level.txt