LICENSE
README.md
pyproject.toml
src/tooluniverse/__init__.py
src/tooluniverse/_lazy_registry_static.py
src/tooluniverse/admetai_tool.py
src/tooluniverse/agentic_tool.py
src/tooluniverse/allen_brain_tool.py
src/tooluniverse/alliance_genome_tool.py
src/tooluniverse/alphafold_tool.py
src/tooluniverse/alphamissense_tool.py
src/tooluniverse/arrayexpress_tool.py
src/tooluniverse/arxiv_tool.py
src/tooluniverse/async_base.py
src/tooluniverse/base_rest_tool.py
src/tooluniverse/base_tool.py
src/tooluniverse/bgee_tool.py
src/tooluniverse/bigg_models_tool.py
src/tooluniverse/bindingdb_tool.py
src/tooluniverse/biogrid_tool.py
src/tooluniverse/bioimage_archive_tool.py
src/tooluniverse/biomodels_tool.py
src/tooluniverse/biorxiv_tool.py
src/tooluniverse/biosamples_tool.py
src/tooluniverse/biostudies_tool.py
src/tooluniverse/blast_tool.py
src/tooluniverse/boltz_tool.py
src/tooluniverse/brenda_tool.py
src/tooluniverse/build_optimizer.py
src/tooluniverse/bvbrc_tool.py
src/tooluniverse/cadd_tool.py
src/tooluniverse/cath_tool.py
src/tooluniverse/cbioportal_tool.py
src/tooluniverse/cdc_tool.py
src/tooluniverse/cellosaurus_tool.py
src/tooluniverse/cellxgene_census_tool.py
src/tooluniverse/chebi_tool.py
src/tooluniverse/chem_tool.py
src/tooluniverse/chipatlas_tool.py
src/tooluniverse/civic_tool.py
src/tooluniverse/clingen_ar_tool.py
src/tooluniverse/clingen_tool.py
src/tooluniverse/clinical_trials_tool.py
src/tooluniverse/clinvar_tool.py
src/tooluniverse/complex_portal_tool.py
src/tooluniverse/compose_tool.py
src/tooluniverse/core_tool.py
src/tooluniverse/cosmic_tool.py
src/tooluniverse/crossref_tool.py
src/tooluniverse/ctd_tool.py
src/tooluniverse/ctg_tool.py
src/tooluniverse/custom_tool.py
src/tooluniverse/dailymed_tool.py
src/tooluniverse/dataset_tool.py
src/tooluniverse/dbfetch_tool.py
src/tooluniverse/dblp_tool.py
src/tooluniverse/dbpedia_tool.py
src/tooluniverse/dbsnp_tool.py
src/tooluniverse/deepgo_tool.py
src/tooluniverse/default_config.py
src/tooluniverse/depmap_tool.py
src/tooluniverse/dgidb_tool.py
src/tooluniverse/digikey_tool.py
src/tooluniverse/disgenet_tool.py
src/tooluniverse/doaj_tool.py
src/tooluniverse/doctor.py
src/tooluniverse/ebi_proteins_ext_tool.py
src/tooluniverse/ebi_search_tool.py
src/tooluniverse/ebi_taxonomy_tool.py
src/tooluniverse/efo_tool.py
src/tooluniverse/emdb_tool.py
src/tooluniverse/emolecules_tool.py
src/tooluniverse/ena_browser_tool.py
src/tooluniverse/ena_portal_tool.py
src/tooluniverse/enamine_tool.py
src/tooluniverse/encode_tool.py
src/tooluniverse/enrichr_tool.py
src/tooluniverse/ensembl_compara_tool.py
src/tooluniverse/ensembl_ld_tool.py
src/tooluniverse/ensembl_phenotype_tool.py
src/tooluniverse/ensembl_regulation_tool.py
src/tooluniverse/ensembl_tool.py
src/tooluniverse/ensembl_vep_tool.py
src/tooluniverse/europe_pmc_tool.py
src/tooluniverse/europepmc_annotations_tool.py
src/tooluniverse/eve_tool.py
src/tooluniverse/exceptions.py
src/tooluniverse/execute_function.py
src/tooluniverse/expression_atlas_tool.py
src/tooluniverse/extended_hooks.py
src/tooluniverse/faers_analytics_tool.py
src/tooluniverse/fatcat_tool.py
src/tooluniverse/fda_orange_book_tool.py
src/tooluniverse/fda_pharmacogenomic_biomarkers_tool.py
src/tooluniverse/file_download_tool.py
src/tooluniverse/fooddata_central_tool.py
src/tooluniverse/fourdn_tool.py
src/tooluniverse/gbif_tool.py
src/tooluniverse/gdc_tool.py
src/tooluniverse/gene_ontology_tool.py
src/tooluniverse/generate_lazy_registry.py
src/tooluniverse/generate_tools.py
src/tooluniverse/genomics_gene_search_tool.py
src/tooluniverse/geo_tool.py
src/tooluniverse/ghost_tool.py
src/tooluniverse/glygen_tool.py
src/tooluniverse/gnomad_tool.py
src/tooluniverse/gnps_tool.py
src/tooluniverse/go_api_tool.py
src/tooluniverse/gpcrdb_tool.py
src/tooluniverse/graphql_tool.py
src/tooluniverse/gtex_tool.py
src/tooluniverse/gtex_v2_tool.py
src/tooluniverse/gtopdb_tool.py
src/tooluniverse/gwas_tool.py
src/tooluniverse/hal_tool.py
src/tooluniverse/hca_tool.py
src/tooluniverse/health_disparities_tool.py
src/tooluniverse/hgnc_tool.py
src/tooluniverse/hmdb_tool.py
src/tooluniverse/hpa_tool.py
src/tooluniverse/hpo_tool.py
src/tooluniverse/http_api_server.py
src/tooluniverse/http_api_server_cli.py
src/tooluniverse/http_client.py
src/tooluniverse/http_utils.py
src/tooluniverse/humanbase_tool.py
src/tooluniverse/icd_tool.py
src/tooluniverse/iedb_tool.py
src/tooluniverse/imgt_tool.py
src/tooluniverse/impc_tool.py
src/tooluniverse/inaturalist_tool.py
src/tooluniverse/intact_tool.py
src/tooluniverse/interpro_tool.py
src/tooluniverse/interproscan_tool.py
src/tooluniverse/itis_tool.py
src/tooluniverse/jaspar_tool.py
src/tooluniverse/jlcsearch_tool.py
src/tooluniverse/kegg_tool.py
src/tooluniverse/lipidmaps_tool.py
src/tooluniverse/llm_clients.py
src/tooluniverse/logging_config.py
src/tooluniverse/loinc_tool.py
src/tooluniverse/markitdown_tool.py
src/tooluniverse/mcp_client_tool.py
src/tooluniverse/mcp_integration.py
src/tooluniverse/mcp_tool_registry.py
src/tooluniverse/medlineplus_tool.py
src/tooluniverse/memory_manager.py
src/tooluniverse/mesh_tool.py
src/tooluniverse/metabolights_tool.py
src/tooluniverse/metabolomics_workbench_tool.py
src/tooluniverse/metacyc_tool.py
src/tooluniverse/mgnify_expanded_tool.py
src/tooluniverse/mgnify_tool.py
src/tooluniverse/molecule_2d_tool.py
src/tooluniverse/molecule_3d_tool.py
src/tooluniverse/monarch_v3_tool.py
src/tooluniverse/mouser_tool.py
src/tooluniverse/mpd_tool.py
src/tooluniverse/mygene_tool.py
src/tooluniverse/ncbi_datasets_tool.py
src/tooluniverse/ncbi_eutils_tool.py
src/tooluniverse/ncbi_nucleotide_tool.py
src/tooluniverse/ncbi_sra_tool.py
src/tooluniverse/nci_thesaurus_tool.py
src/tooluniverse/ndex_tool.py
src/tooluniverse/neuromorpho_tool.py
src/tooluniverse/nextstrain_tool.py
src/tooluniverse/nhanes_tool.py
src/tooluniverse/nvidia_nim_tool.py
src/tooluniverse/obis_tool.py
src/tooluniverse/odphp_tool.py
src/tooluniverse/ols_tool.py
src/tooluniverse/oma_tool.py
src/tooluniverse/omim_tool.py
src/tooluniverse/oncokb_tool.py
src/tooluniverse/openaire_tool.py
src/tooluniverse/openalex_tool.py
src/tooluniverse/openfda_adv_tool.py
src/tooluniverse/openfda_tool.py
src/tooluniverse/opentree_tool.py
src/tooluniverse/orphanet_tool.py
src/tooluniverse/osf_preprints_tool.py
src/tooluniverse/output_hook.py
src/tooluniverse/package_discovery_tool.py
src/tooluniverse/package_tool.py
src/tooluniverse/paleobiology_tool.py
src/tooluniverse/panther_tool.py
src/tooluniverse/pathway_commons_tool.py
src/tooluniverse/pdbe_api_tool.py
src/tooluniverse/pdbe_search_tool.py
src/tooluniverse/pharmgkb_tool.py
src/tooluniverse/pharos_tool.py
src/tooluniverse/plant_reactome_tool.py
src/tooluniverse/pmc_tool.py
src/tooluniverse/pombase_tool.py
src/tooluniverse/pride_tool.py
src/tooluniverse/protein_structure_3d_tool.py
src/tooluniverse/proteins_api_tool.py
src/tooluniverse/proteinsplus_tool.py
src/tooluniverse/proteomexchange_tool.py
src/tooluniverse/pubchem_bioassay_tool.py
src/tooluniverse/pubchem_tool.py
src/tooluniverse/pubmed_tool.py
src/tooluniverse/pubtator_tool.py
src/tooluniverse/pypi_package_inspector_tool.py
src/tooluniverse/python_executor_tool.py
src/tooluniverse/quickgo_tool.py
src/tooluniverse/rcsb_pdb_tool.py
src/tooluniverse/rcsb_search_tool.py
src/tooluniverse/reactome_analysis_tool.py
src/tooluniverse/reactome_tool.py
src/tooluniverse/regulomedb_tool.py
src/tooluniverse/remap_tool.py
src/tooluniverse/remote_tool.py
src/tooluniverse/restful_tool.py
src/tooluniverse/rfam_tool.py
src/tooluniverse/rhea_tool.py
src/tooluniverse/rnacentral_tool.py
src/tooluniverse/rxnorm_tool.py
src/tooluniverse/sabdab_tool.py
src/tooluniverse/sasbdb_tool.py
src/tooluniverse/screen_tool.py
src/tooluniverse/semantic_scholar_tool.py
src/tooluniverse/sgd_tool.py
src/tooluniverse/simbad_tool.py
src/tooluniverse/smcp.py
src/tooluniverse/smcp_server.py
src/tooluniverse/smolagent_tool.py
src/tooluniverse/spliceai_tool.py
src/tooluniverse/stitch_tool.py
src/tooluniverse/string_tool.py
src/tooluniverse/swissdock_tool.py
src/tooluniverse/swissmodel_tool.py
src/tooluniverse/task_manager.py
src/tooluniverse/task_progress.py
src/tooluniverse/therasabdab_tool.py
src/tooluniverse/tool_defaults.py
src/tooluniverse/tool_discovery_tools.py
src/tooluniverse/tool_finder_embedding.py
src/tooluniverse/tool_finder_keyword.py
src/tooluniverse/tool_finder_llm.py
src/tooluniverse/tool_graph_web_ui.py
src/tooluniverse/tool_name_utils.py
src/tooluniverse/tool_registry.py
src/tooluniverse/ucsc_genome_tool.py
src/tooluniverse/umls_tool.py
src/tooluniverse/unichem_tool.py
src/tooluniverse/unified_guideline_tools.py
src/tooluniverse/uniprot_idmapping_tool.py
src/tooluniverse/uniprot_tool.py
src/tooluniverse/unpaywall_tool.py
src/tooluniverse/url_tool.py
src/tooluniverse/uspto_tool.py
src/tooluniverse/utils.py
src/tooluniverse/visualization_tool.py
src/tooluniverse/web_search_tool.py
src/tooluniverse/who_gho_tool.py
src/tooluniverse/wikidata_sparql_tool.py
src/tooluniverse/wikipathways_tool.py
src/tooluniverse/wikipedia_tool.py
src/tooluniverse/wormbase_tool.py
src/tooluniverse/worms_tool.py
src/tooluniverse/xml_tool.py
src/tooluniverse/zenodo_tool.py
src/tooluniverse/zinc_tool.py
src/tooluniverse.egg-info/PKG-INFO
src/tooluniverse.egg-info/SOURCES.txt
src/tooluniverse.egg-info/dependency_links.txt
src/tooluniverse.egg-info/entry_points.txt
src/tooluniverse.egg-info/requires.txt
src/tooluniverse.egg-info/top_level.txt
src/tooluniverse/cache/__init__.py
src/tooluniverse/cache/memory_cache.py
src/tooluniverse/cache/result_cache_manager.py
src/tooluniverse/cache/sqlite_backend.py
src/tooluniverse/compose_scripts/__init__.py
src/tooluniverse/compose_scripts/biomarker_discovery.py
src/tooluniverse/compose_scripts/comprehensive_drug_discovery.py
src/tooluniverse/compose_scripts/drug_safety_analyzer.py
src/tooluniverse/compose_scripts/enhanced_multi_agent_literature_search.py
src/tooluniverse/compose_scripts/literature_tool.py
src/tooluniverse/compose_scripts/multi_agent_literature_search.py
src/tooluniverse/compose_scripts/output_summarizer.py
src/tooluniverse/compose_scripts/tool_description_optimizer.py
src/tooluniverse/compose_scripts/tool_discover.py
src/tooluniverse/compose_scripts/tool_graph_composer.py
src/tooluniverse/compose_scripts/tool_graph_generation.py
src/tooluniverse/compose_scripts/tool_metadata_generator.py
src/tooluniverse/data/__init__.py
src/tooluniverse/data/admetai_tools.json
src/tooluniverse/data/adverse_event_tools.json
src/tooluniverse/data/agentic_tools.json
src/tooluniverse/data/allen_brain_tools.json
src/tooluniverse/data/alliance_genome_tools.json
src/tooluniverse/data/alphafold_tools.json
src/tooluniverse/data/alphamissense_tools.json
src/tooluniverse/data/arrayexpress_tools.json
src/tooluniverse/data/arxiv_tools.json
src/tooluniverse/data/bgee_tools.json
src/tooluniverse/data/bigg_models_tools.json
src/tooluniverse/data/bindingdb_tools.json
src/tooluniverse/data/biogrid_tools.json
src/tooluniverse/data/bioimage_archive_tools.json
src/tooluniverse/data/biomodels_tools.json
src/tooluniverse/data/biorxiv_tools.json
src/tooluniverse/data/biosamples_tools.json
src/tooluniverse/data/biostudies_tools.json
src/tooluniverse/data/biothings_tools.json
src/tooluniverse/data/blast_tools.json
src/tooluniverse/data/boltz_mcp_loader_tools.json
src/tooluniverse/data/brenda_tools.json
src/tooluniverse/data/bvbrc_tools.json
src/tooluniverse/data/cadd_tools.json
src/tooluniverse/data/cath_tools.json
src/tooluniverse/data/cbioportal_tools.json
src/tooluniverse/data/cdc_tools.json
src/tooluniverse/data/cellosaurus_tools.json
src/tooluniverse/data/cellxgene_census_tools.json
src/tooluniverse/data/chebi_tools.json
src/tooluniverse/data/chembl_tools.json
src/tooluniverse/data/chipatlas_tools.json
src/tooluniverse/data/civic_tools.json
src/tooluniverse/data/clingen_ar_tools.json
src/tooluniverse/data/clingen_tools.json
src/tooluniverse/data/clinical_trials_tools.json
src/tooluniverse/data/clinicaltrials_gov_tools.json
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src/tooluniverse/data/compact_mode_tools.json
src/tooluniverse/data/complex_portal_tools.json
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src/tooluniverse/data/core_tools.json
src/tooluniverse/data/cosmic_tools.json
src/tooluniverse/data/crossref_tools.json
src/tooluniverse/data/ctd_tools.json
src/tooluniverse/data/dailymed_tools.json
src/tooluniverse/data/dataset_tools.json
src/tooluniverse/data/dbfetch_tools.json
src/tooluniverse/data/dblp_tools.json
src/tooluniverse/data/dbpedia_tools.json
src/tooluniverse/data/dbsnp_tools.json
src/tooluniverse/data/deepgo_tools.json
src/tooluniverse/data/depmap_tools.json
src/tooluniverse/data/dgidb_tools.json
src/tooluniverse/data/digikey_tools.json
src/tooluniverse/data/disease_target_score_tools.json
src/tooluniverse/data/disgenet_tools.json
src/tooluniverse/data/doaj_tools.json
src/tooluniverse/data/drug_discovery_agents.json
src/tooluniverse/data/ebi_proteins_ext_tools.json
src/tooluniverse/data/ebi_search_tools.json
src/tooluniverse/data/ebi_taxonomy_tools.json
src/tooluniverse/data/efo_tools.json
src/tooluniverse/data/embedding_tools.json
src/tooluniverse/data/emdb_tools.json
src/tooluniverse/data/emolecules_tools.json
src/tooluniverse/data/ena_browser_tools.json
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src/tooluniverse/data/encode_tools.json
src/tooluniverse/data/enrichr_tools.json
src/tooluniverse/data/ensembl_compara_tools.json
src/tooluniverse/data/ensembl_ld_tools.json
src/tooluniverse/data/ensembl_phenotype_tools.json
src/tooluniverse/data/ensembl_regulation_tools.json
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src/tooluniverse/data/ensembl_vep_tools.json
src/tooluniverse/data/euhealth_tools.json
src/tooluniverse/data/europe_pmc_tools.json
src/tooluniverse/data/europepmc_annotations_tools.json
src/tooluniverse/data/eve_tools.json
src/tooluniverse/data/expert_feedback_tools.json
src/tooluniverse/data/expression_atlas_tools.json
src/tooluniverse/data/faers_analytics_tools.json
src/tooluniverse/data/fatcat_tools.json
src/tooluniverse/data/fda_drug_adverse_event_detail_tools.json
src/tooluniverse/data/fda_drug_adverse_event_tools.json
src/tooluniverse/data/fda_drug_labeling_tools.json
src/tooluniverse/data/fda_drugs_with_brand_generic_names_for_tool.py
src/tooluniverse/data/fda_orange_book_tools.json
src/tooluniverse/data/fda_pharmacogenomic_biomarkers_tools.json
src/tooluniverse/data/file_download_tools.json
src/tooluniverse/data/finder_tools.json
src/tooluniverse/data/fooddata_central_tools.json
src/tooluniverse/data/fourdn_tools.json
src/tooluniverse/data/gbif_tools.json
src/tooluniverse/data/gdc_tools.json
src/tooluniverse/data/gene_ontology_tools.json
src/tooluniverse/data/geo_tools.json
src/tooluniverse/data/glygen_tools.json
src/tooluniverse/data/gnomad_tools.json
src/tooluniverse/data/gnps_tools.json
src/tooluniverse/data/go_api_tools.json
src/tooluniverse/data/gpcrdb_tools.json
src/tooluniverse/data/gtex_tools.json
src/tooluniverse/data/gtex_v2_tools.json
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src/tooluniverse/data/gwas_tools.json
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src/tooluniverse/data/health_disparities_tools.json
src/tooluniverse/data/hgnc_tools.json
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