python
python-pip
samtools

# required for bokeh (required for bamliquidator)
python-flask
python-requests
python-tornado
python-pandas
python-jinja2
python-colorama
python-markdown
python-pystache
python-pygments
python-six
python-dateutil
python-itsdangerous
python-greenlet
python-werkzeug
python-markupsafe

# required for bamliquidator
python-numpy
python-scipy
python-pandas
python-redis
python-software-properties
python-tables
python-numexpr

# required for ROSE2
r-base
