file
parallel
picard-tools
bowtie
bowtie2
bwa
tophat
abyss
p7zip-full
python-pip
python3-pip
python-xlrd
python-setuptools
python3-setuptools
python-requests
python3-requests
python-appdirs
python3-appdirs
python-six
python3-six
python-yaml
python3-yaml
python-wheel
python3-wheel
python-dev
libpython2.7
build-essential
gfortran
r-base-core
tabix
pypy
xml2
libcurl3
trimmomatic
texlive-latex-base
texlive-latex-recommended

# Required by abyss scripts.
bsdmainutils

# Required by ea-utils.
libgsl2

# Required for some R packages.
liblapack3
libopenblas-base

# Required for some Perl packages.
liburi-perl
