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        CALIPHO group at the SIB - Swiss Institute of Bioinformatics
        Geneva, Switzerland
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 Description: Cellosaurus: cross-referencing to external resources
 Version: 44.0
 Last update: 15-December-2022

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This document describes how you can establish web links (cross-references)
to the various resources that are listed in the Cellosaurus.

Important notes

a) In this document "%s" stands for the identifier that should be parsed
out of the relevant DR, RX, CC, DI or OX line. For example, if you want to
link out from the following DR line:

 DR   ATCC; HTB-30

you should use the information on the "Db_URL" line of the ATCC entry in
this document which currently indicates:

 https://www.atcc.org/Products/%s

thus your corresponding web link should go to:

 https://www.atcc.org/Products/HTB-30

b) For historical and reference purposes we keep in the Cellosaurus cross-
references to catalog entries corresponding to cell lines that are no longer
distributed by a specific cell line collection. We indicate this fact by
using the "CC" line topic "Discontinued". Example:

 CC   Discontinued: DSMZ; ACC-506; true.

In this example when you parse out the corresponding DR line:

 DR   DSMZ; ACC-506

you should not establish a web link to that particular cross-reference.

c) If you want to do the reverse of what is described in this document, ie
establishing web links to the Cellosaurus, you can do so by using the
following Db_URL:

 https://www.cellosaurus.org/%s

where %s is the accession number of the cell line. Example:

 https://www.cellosaurus.org/CVCL_0033

The format of the various lines that include cross-references are described
here:

1) DR lines

Format: DR   Resource_abbrev; %s
Where : Resource_abbrev is one of: 4DN|Abcam|ABCD|ABM|AddexBio|ArrayExpress|ATCC|BCGO|BCRC|BCRJ|BEI_Resources|BTO|BioSample|BioSamples|CancerTools|CBA|CCLV|CCRID|CCTCC|Cell_Biolabs|Cell_Model_Passport|CGH-DB|ChEMBL-Cells|ChEMBL-Targets|CLDB|CLO|CLS|ColonAtlas|Coriell|Cosmic|Cosmic-CLP|dbGAP|dbMHC|DepMap|DGRC|DiscoverX|DSMZ|DSMZCellDive|EBiSC|ECACC|EFO|EGA|ENCODE|ESTDAB|FCDI|FCS-free|FlyBase_Cell_line|GDSC|GEO|HipSci|HIVReagentProgram|Horizon_Discovery|hPSCreg|IARC_TP53|IBRC|ICLC|ICLDB|IGRhCellID|IGSR|IHW|Imanis|Innoprot|IPD-IMGT/HLA|ISCR|IZSLER|JCRB|KCB|KCLB|Kerafast|KYinno|LiGeA|LIMORE|LINCS_HMS|LINCS_LDP|Lonza|MCCL|MeSH|MetaboLights|Millipore|MMRRC|NCBI_Iran|NCI-DTP|NHCDR|NISES|NRFC|PerkinElmer|PharmacoDB|PRIDE|Progenetix|PubChem_Cell_line|RCB|Rockland|RSCB|SKIP|SKY/M-FISH/CGH|SLKBase|TKG|TNGB|TOKU-E|WiCell|Wikidata|Ximbio

2) RX lines

Format: RX   Resource_abbrev=%s;
Where : Resource_abbrev is one of: CelloPub|DOI|Patent|PubMed

3) CC lines (except "sequence variation")

Topic:  Knockout cell
Format: CC   Knockout cell: Method=Method_name; Resource_abbrev; %s; Gene/protein_name.
Where : Resource_abbrev is one of: FlyBase_Gene|HGNC|MGI|RGD|UniProtKB|VGNC

Topic:  Monoclonal antibody target
Format: CC   Monoclonal antibody target: Resource_abbrev; %s; Gene/protein_name.
Where : Resource_abbrev is one of: ChEBI|PubChem|UniProtKB

Topic:  Selected for resistance to
Format: CC   Selected for resistance to: Resource_abbrev; %s; Compound/protein_name.
Where : Resource_abbrev is one of: ChEBI|DrugBank|NCIt|PubChem|UniProtKB

Topic:  Transfected with
Format: CC   Transfected with: Resource_abbrev; %s; Gene/protein_name.
Where : Resource_abbrev is one of: FlyBase_Gene|HGNC|MGI|RGD|UniProtKB|VGNC

Topic:  Transformant
Format: CC   Transformant: Resource_abbrev; %s; Transformant_name.
Where : Resource_abbrev is one of: ChEBI|NCBI_TaxID|NCIt|PubChem

4) CC lines "Sequence variation"

The "Sequence variation" CC topic has 4 subtopics:

Format: CC   Sequence variation: Gene amplification; Resource_abbrev; %s; Gene_name; Amplification_type; Zygosity=Zyg_value [; Note=Free_text] (Sources).
Format: CC   Sequence variation: Gene deletion; Resource_abbrev; %s; Gene_name; Zygosity=Zyg_value [; Note=Free_text] (Sources).
Format: CC   Sequence variation: Gene fusion; Resource_abbrev; %s; Gene_name + Resource_abbrev; %s; Gene_name; Names(s)=Name1[, Name2][, NameX] [; Note=Free_text] (Sources).
Format: CC   Sequence variation: Mutation; Resource_abbrev; %s; Gene_name; Mutation_type; Mutation_description [; ClinVar=%s|dbSNP=%s]; Zygosity=Zyg_value [; Note=Free_text] (Sources).

Where:

Resource_abbrev is one of: HGNC|MGI|RGD|UniProtKB|VGNC
Amplification_type is one of: Duplication|Triplication|Quadruplication|Extensive
Mutation_type is one of: Simple|Simple_corrected|Simple_edited|Repeat_expansion|Repeat_expansion_corrected|Repeat_expansion_edited|Unexplicit|Unexplicit_corrected|Unexplicit_edited|None_reported
Mutation_description is: the description of the mutation using, when possible the HGVS nomenclature.
Zyg_value is one of: Hemizygous|Heteroplasmic|Heterozygous|Homoplasmic|Homozygous|Mosaic|Unspecified|-

5) DI lines

Format: DI   Resource_abbrev; %s; Disease_name
Where : Resource_abbrev is one of: NCIt|ORDO

6) OX lines

Format: OX   Resource_abbrev=%s; ! Species_name
Where : Resource_abbrev is: NCBI_TaxID

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Abbrev: 4DN
Name  : 4D Nucleome Data Portal
Server: https://data.4dnucleome.org/
Db_URL: https://data.4dnucleome.org/biosources/%s/
Term. : No
Cat   : Biological sample resources
//
Abbrev: Abcam
Name  : Abcam cell line products
Server: https://www.abcam.com/nav/cell-lines-and-lysates
Db_URL: https://www.abcam.com/%s.html
Term. : No
Cat   : Cell line collections
//
Abbrev: ABCD
Name  : AntiBodies Chemically Defined database
Server: https://web.expasy.org/abcd/
Db_URL: https://web.expasy.org/abcd/%s
Term. : No
Cat   : Biological sample resources
//
Abbrev: ABM
Name  : Applied Biological Materials cell line products
Server: https://www.abmgood.com/Cell-Biology.html
Db_URL: https://www.abmgood.com/catalogsearch/result/?cat=&q=%s
Term. : No
Cat   : Cell line collections
//
Abbrev: AddexBio
Name  : AddexBio cell line products
Server: https://www.addexbio.com/productshow?id=4
Db_URL: https://www.addexbio.com/productdetail?pid=%s
        Note: %s is the value after the slash "/" in the DR line.
        Example: for "DR   AddexBio; T0016001/4918": %s=4918
Term. : No
Cat   : Cell line collections
//
Abbrev: ArrayExpress
Name  : ArrayExpress Archive of Functional Genomics
Server: https://www.ebi.ac.uk/biostudies/arrayexpress
Db_URL: https://www.ebi.ac.uk/biostudies/ArrayExpress/studies/%s
Term. : No
Cat   : Gene expression databases
//
Abbrev: ATCC
Name  : American Type Culture Collection
Server: https://www.atcc.org/
Db_URL: https://www.atcc.org/Products/%s
Term. : No
Cat   : Cell line collections
//
Abbrev: BCGO
Name  : Beta Cell Genomics Ontology
Server: https://github.com/obi-bcgo/bcgo
Db_URL: http://www.ontobee.org/ontology/BCGO?iri=http://purl.obolibrary.org/obo/%s
Term. : No
Cat   : Anatomy/cell type resources
//
Abbrev: BCRC
Name  : Taiwan Bioresource Collection and Research Center
Server: https://catalog.bcrc.firdi.org.tw/
Db_URL: https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=%s
Term. : No
Cat   : Cell line collections
//
Abbrev: BCRJ
Name  : Banco de Celulas do Rio de Janeiro
Server: http://bcrj.org.br/celula/bcrj
Db_URL: http://bcrj.org.br/celula/%s
Term. : No
Cat   : Cell line collections
//
Abbrev: BEI_Resources
Name  : BEI Resources
Server: https://www.beiresources.org/Home.aspx
Db_URL: https://www.beiresources.org/Catalog/cellBanks/%s.aspx
Term. : No
Cat   : Cell line collections
//
Abbrev: BioSample
Name  : BioSample database
Server: https://www.ncbi.nlm.nih.gov/biosample
Db_URL: https://www.ncbi.nlm.nih.gov/biosample/?term=%s
Term. : No
Cat   : Biological sample resources
//
Abbrev: BioSamples
Name  : BioSamples database
Server: https://www.ebi.ac.uk/biosamples/
Db_URL: https://www.ebi.ac.uk/biosamples/samples/%s
Term. : No
Cat   : Biological sample resources
//
Abbrev: BTO
Name  : BRENDA Tissue Ontology
Server: https://bioportal.bioontology.org/ontologies/BTO
Db_URL: https://bioportal.bioontology.org/ontologies/BTO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBTO_%s
        Note: %s is the numerical part of the BTO:nnnnnnn identifier
Term. : No
Cat   : Anatomy/cell type resources
//
Abbrev: CancerTools
Name  : CancerTools.org
Server: https://www.cancertools.org/cell-lines
Db_URL: https://www.cancertools.org/cell-lines/%s
Term. : No
Cat   : Cell line collections
//
Abbrev: CBA
Name  : CellBank Australia
Server: http://www.cellbankaustralia.com/cellbank-australia-exclusive-lines/
Db_URL: http://www.cellbankaustralia.com/%s
Term. : No
Cat   : Cell line collections
//
Abbrev: CCLV
Name  : Collection of Cell Lines in Veterinary Medicine
Server: https://www.fli.de/en/services/collection-of-cell-lines-in-veterinary-medicine-cclv/
Db_URL: None
Term. : No
Cat   : Cell line collections
//
Abbrev: CCRID
Name  : Chinese Cell Resource Information Database
Server: http://cellresource.cn/
Db_URL: http://www.cellresource.cn/cellsearch.aspx?sc=1&where=%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: CCTCC
Name  : China Center for Type Culture Collection
Server: http://www.cctcc.org/
Db_URL: None
Cat   : Cell line collections
//
Abbrev: Cell_Biolabs
Name  : Cell Biolabs cell line products
Server: https://www.cellbiolabs.com
Db_URL: https://www.cellbiolabs.com/search?keywords=%s
Term. : No
Cat   : Cell line collections
//
Abbrev: Cell_Model_Passport
Name  : Sanger Cell Model Passports
Server: https://cellmodelpassports.sanger.ac.uk/
Db_URL: https://cellmodelpassports.sanger.ac.uk/passports/%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: CelloPub
Name  : Cellosaurus Publication
Server: https://www.cellosaurus.org/
Db_URL: https://www.cellosaurus.org/cellopub/%s
Term. : No
Cat   : Reference resources
//
Abbrev: Cellosaurus
Name  : Cellosaurus - a knowledge resource on cell lines
Server: https://www.cellosaurus.org/
Db_URL: https://www.cellosaurus.org/%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: CGH-DB
Name  : CGH Data Base
Server: http://www.cghtmd.jp/CGHDatabase/index_e.jsp
Db_URL: http://www.cghtmd.jp/CGHDatabase/mapViewer?hid=%s&aid=%t&lang=en
        Note: %s and %t are respectively the values before and after the dash in the DR line.
        Example: for "DR   CGH-DB; 9029-4": %s=9029, %t=4
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: ChEBI
Name  : Chemical Entities of Biological Interest
Server: https://www.ebi.ac.uk/chebi/
Db_URL: https://www.ebi.ac.uk/chebi/searchId.do?chebiId=%s
Term. : Yes
Cat   : Chemistry resources
//
Abbrev: ChEMBL-Cells
Name  : ChEMBL database of bioactive drug-like small molecules - Cell lines section
Server: https://www.ebi.ac.uk/chembldb
Db_URL: https://www.ebi.ac.uk/chembldb/cell/inspect/%s
Term. : No
Cat   : Chemistry resources
//
Abbrev: ChEMBL-Targets
Name  : ChEMBL database of bioactive drug-like small molecules - Targets section
Server: https://www.ebi.ac.uk/chembldb
Db_URL: https://www.ebi.ac.uk/chembldb/target/inspect/%s
Term. : No
Cat   : Chemistry resources
//
Abbrev: CL
Name  : Cell Ontology
Server: https://obophenotype.github.io/cell-ontology/
Db_URL: https://www.ebi.ac.uk/ols/ontologies/cl/terms?iri=http://purl.obolibrary.org/obo/%s
Term. : Yes
Cat   : Anatomy/cell type resources
//
Abbrev: CLDB
Name  : Cell Line Data Base
Server: http://bioinformatics.hsanmartino.it/cldb/
Db_URL: http://bioinformatics.hsanmartino.it/cldb/%s.html
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: ClinVar
Name  : ClinVar
Server: https://www.ncbi.nlm.nih.gov/clinvar/
Db_URL: https://www.ncbi.nlm.nih.gov/clinvar/variation/%s
Term. : No
Cat   : Polymorphism and mutation databases
//
Abbrev: CLO
Name  : Cell Line Ontology
Server: http://www.clo-ontology.org
Db_URL: https://www.ebi.ac.uk/ols/ontologies/clo/terms?iri=http://purl.obolibrary.org/obo/%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: CLS
Name  : Cell Lines Service
Server: https://cls.shop/
Db_URL: https://cls.shop/%s
Term. : No
Cat   : Cell line collections
//
Abbrev: ColonAtlas
Name  : Colorectal Cancer Atlas
Server: http://www.coloncanceratlas.org
Db_URL: http://www.coloncanceratlas.org/search_cell_line?cell_line=%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: Coriell
Name  : Coriell Institute Biorepositories
Server: https://catalog.coriell.org
Db_URL: https://catalog.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=%s&Product=CC
Term. : No
Cat   : Cell line collections
//
Abbrev: Cosmic
Name  : Catalogue of somatic mutations in cancer
Server: https://cancer.sanger.ac.uk/cosmic
Db_URL: https://cancer.sanger.ac.uk/cosmic/sample/overview?id=%s
Term. : No
Cat   : Polymorphism and mutation databases
//
Abbrev: Cosmic-CLP
Name  : COSMIC Cell lines Project
Server: https://cancer.sanger.ac.uk/cell_lines
Db_URL: https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: dbGAP
Name  : Database of Genotypes and Phenotypes
Server: https://www.ncbi.nlm.nih.gov/gap/
Db_URL: https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=%s
Term. : No
Cat   : Sequence databases
//
Abbrev: dbMHC
Name  : dbMHC database
Server: https://www.ncbi.nlm.nih.gov/gv/mhc/
Db_URL: None
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: dbSNP
Name  : Single Nucleotide Polymorphism database
Server: https://www.ncbi.nlm.nih.gov/snp/
Db_URL: https://www.ncbi.nlm.nih.gov/snp/%s
Term. : No
Cat   : Polymorphism and mutation databases
//
Abbrev: DepMap
Name  : Cancer Dependency Map
Server: https://depmap.org/portal/
Db_URL: https://depmap.org/portal/cell_line/%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: DGRC
Name  : Drosophila Genomics Resource Center
Server: https://dgrc.bio.indiana.edu/cells/Catalog
Db_URL: https://dgrc.bio.indiana.edu/product/View?product=%s
Term. : No
Cat   : Cell line collections
//
Abbrev: DiscoverX
Name  : DiscoverX cell line products
Server: https://www.discoverx.com/products-applications/cell-lines
Db_URL: https://www.discoverx.com/searchproduct?searchtext=%s&searchmode=exact
Term. : No
Cat   : Cell line collections
//
Abbrev: DOI
Name  : Digital Object Identifier
Server: https://dx.doi.org
Db_URL: https://dx.doi.org/%s
Term. : No
Cat   : Reference resources
//
Abbrev: DrugBank
Name  : DrugBank database
Server: https://go.drugbank.com/
Db_URL: https://go.drugbank.com/drugs/%s
Term. : Yes
Cat   : Chemistry resources
//
Abbrev: DSMZ
Name  : Deutsche Sammlung von Mikroorganismen und Zellkulturen
Server: https://www.dsmz.de/collection/catalogue/human-and-animal-cell-lines/catalogue
Db_URL: https://www.dsmz.de/collection/catalogue/details/culture/%s
Term. : No
Cat   : Cell line collections
//
Abbrev: DSMZCellDive
Name  : DSMZ Tools for Diving into Cell Line Data
Server: https://celldive.dsmz.de/
Db_URL: https://celldive.dsmz.de/cellline/%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: EBiSC
Name  : European Bank for induced pluripotent Stem Cells
Server: https://www.ebisc.org
Db_URL: https://cells.ebisc.org/%s
Term. : No
Cat   : Cell line collections
//
Abbrev: ECACC
Name  : European Collection of Cell Cultures
Server: https://www.phe-culturecollections.org.uk/products/celllines/index.aspx
Db_URL: https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?refId=%s&collection=ecacc_gc
        Note:
        For cell lines of the category (CA) "Hybridoma" use:
        https://www.phe-culturecollections.org.uk/products/celllines/hybridoma/detail.jsp?refId=%s&collection=ecacc_hc
        For cell lines of the category (CA) "Induced pluripotent stem cell" use:
        https://www.phe-culturecollections.org.uk/products/celllines/ipsc/detail.jsp?refId=%s&collection=ecacc_ipsc
        For cell lines with a CC 'Part of' with "ECACC randomly selected UK Caucasian blood donors cell line selection" use:
        https://www.phe-culturecollections.org.uk/products/celllines/humanrandomcontrol/detail.jsp?refId=%s&collection=ecacc_hrc
        For cell lines with a CC 'Part of' with "ECACC chromosomal abnormality collection" use:
        https://www.phe-culturecollections.org.uk/products/celllines/humangeneticca/detail.jsp?refId=%s&collection=ecacc_hgc
        For cell lines with a CC 'Part of' with "Motor Neurone Disease (MND) collection" use:
        https://www.phe-culturecollections.org.uk/products/celllines/diseaseandnormalcohortcollections/detail.jsp?refId=%s&collection=ecacc_mnd
Term. : No
Cat   : Cell line collections
//
Abbrev: EFO
Name  : Experimental Factor Ontology
Server: https://www.ebi.ac.uk/efo/
Db_URL: https://www.ebi.ac.uk/efo/%s
Term. : No
Cat   : Experimental variables resources
//
Abbrev: EGA
Name  : European Genome-Phenome Archive
Server: https://ega-archive.org/
Db_URL: https://ega-archive.org/studies/%s
Term. : No
Cat   : Sequence databases
//
Abbrev: ENCODE
Name  : Encyclopedia of DNA Elements
Server: https://www.encodeproject.org
Db_URL: https://www.encodeproject.org/biosamples/%s/
Term. : No
Cat   : Biological sample resources
//
Abbrev: ESTDAB
Name  : European Searchable Tumour Line Database
Server: https://www.ebi.ac.uk/ipd/estdab/
Db_URL: https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: FCDI
Name  : FujiFilm Cellular Dynamics, Inc
Server: https://www.fujifilmcdi.com/cirm-ipsc-products/
Db_URL: None
Term. : No
Cat   : Cell line collections
//
Abbrev: FCS-free
Name  : Fetal Calf Serum-Free Database
Server: https://fcs-free.org/
Db_URL: https://fcs-free.org/fcs-database?%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: FlyBase_Cell_line
Name  : Drosophila genome database; cell line entry
Server: https://flybase.org/cgi-bin/cvreport.pl?id=FBbt%3A00005329
Db_URL: https://flybase.org/reports/%s.html
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: FlyBase_Gene
Name  : Drosophila genome database; gene entry
Server: https://flybase.org
Db_URL: https://flybase.org/reports/%s.html
Term. : Yes
Cat   : Organism-specific databases
//
Abbrev: GDSC
Name  : Genomics of Drug Sensitivity in Cancer Project
Server: https://www.cancerrxgene.org
Db_URL: https://www.cancerrxgene.org/translation/CellLine/%s
Term. : No
Cat   : Chemistry resources
//
Abbrev: GEO
Name  : Gene Expression Omnibus
Server: https://www.ncbi.nlm.nih.gov/geo/
Db_URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=%s
Term. : No
Cat   : Gene expression databases
//
Abbrev: HGNC
Name  : Human Gene Nomenclature Committee Database
Server: https://www.genenames.org
Db_URL: https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:%s
Term. : Yes
Cat   : Organism-specific databases
//
Abbrev: HipSci
Name  : Human Induced Pluripotent Stem Cells Initiative
Server: http://www.hipsci.org
Db_URL: http://www.hipsci.org/lines/#/lines/%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: HIVReagentProgram
Name  : NIH HIV Reagent Program
Server: https://www.hivreagentprogram.org/
Db_URL: https://www.hivreagentprogram.org/Catalog/HRPCellLines/%s.aspx
Term. : No
Cat   : Cell line collections
//
Abbrev: Horizon_Discovery
Name  : Horizon Discovery cell line collection
Server: https://horizondiscovery.com/
Db_URL: https://horizondiscovery.com/en/search?searchterm=%s
Term. : No
Cat   : Cell line collections
//
Abbrev: hPSCreg
Name  : Human Pluripotent Stem Cell Registry
Server: https://hpscreg.eu
Db_URL: https://hpscreg.eu/cell-line/%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: IARC_TP53
Name  : IARC TP53 Database
Server: https://tp53.isb-cgc.org/explore_cl
Db_URL: None
Term. : No
Cat   : Polymorphism and mutation databases
//
Abbrev: IBRC
Name  : Iranian Biological Research Center cell line collection
Server: http://www.en.ibrc.ir/
Db_URL: None
Term. : No
Cat   : Cell line collections
//
Abbrev: ICLC
Name  : Interlab Cell Line Collection
Server: http://www.iclc.it
Db_URL: http://www.iclc.it/details/det_list.php?line_id=%s
Term. : No
Cat   : Cell line collections
//
Abbrev: ICLDB
Name  : Insect Cell Lines DataBase
Server: https://entomology.ca.uky.edu/aginsectcellsdatabase
Db_URL: https://entomology.ca.uky.edu/content/%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: IGRhCellID
Name  : Integrated Genomic Resources of human Cell Lines for Identification
Server: http://igrcid.ibms.sinica.edu.tw/cgi-bin/index.cgi
Db_URL: http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: IGSR
Name  : International Genome Sample Resource
Server: https://www.internationalgenome.org/
Db_URL: https://www.internationalgenome.org/data-portal/sample/%s
Term. : No
Cat   : Biological sample resources
//
Abbrev: IHW
Name  : International Histocompatibility Workshop cell lines
Server: https://www.fredhutch.org/en/research/institutes-networks-ircs/international-histocompatibility-working-group.html
Db_URL: None
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: Imanis
Name  : Imanis Life Sciences cell line products
Server: https://www.imanislife.com/collections/cell-lines/
Db_URL: https://www.imanislife.com/?s=%s
Term. : No
Cat   : Cell line collections
//
Abbrev: Innoprot
Name  : Innoprot cell line products
Server: https://innoprot.com/
Db_URL: https://innoprot.com/?s=%s&lang=en
Term. : No
Cat   : Cell line collections
//
Abbrev: IPD-IMGT/HLA
Name  : IPD-IMGT/HLA database
Server: https://www.ebi.ac.uk/ipd/imgt/hla/
Db_URL: https://www.ebi.ac.uk/ipd/imgt/hla/cells/cell/?cellid=%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: ISCR
Name  : International Stem Cell Registry
Server: https://www.umassmed.edu/iscr/
Db_URL: None
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: IZSLER
Name  : Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna biobank
Server: http://www.ibvr.org/Services/CellCultures.aspx
Db_URL: None
Term. : No
Cat   : Cell line collections
//
Abbrev: JCRB
Name  : Japanese Collection of Research Bioresources Cell Bank
Server: http://cellbank.nibiohn.go.jp/english/
Db_URL: http://cellbank.nibiohn.go.jp//~cellbank/en/search_res_det.cgi?RNO=%s
Term. : No
Cat   : Cell line collections
//
Abbrev: KCB
Name  : Kunming Cell Bank of Type Culture Collection
Server: http://www.kmcellbank.com/
Db_URL: None
Term. : No
Cat   : Cell line collections
//
Abbrev: KCLB
Name  : Korean Cell Line Bank
Server: https://cellbank.snu.ac.kr/eng/
Db_URL: https://cellbank.snu.ac.kr/main/tmpl/sub_main.php?m_cd=6&m_id=0201&strQ=%s
Term. : No
Cat   : Cell line collections
//
Abbrev: Kerafast
Name  : Kerafast cell lines
Server: https://www.kerafast.com/
Db_URL: https://www.kerafast.com/Search?SearchTerm=&quot;%s&quot;
Term. : No
Cat   : Cell line collections
//
Abbrev: KYinno
Name  : KYinno cell lines
Server: https://www.kyinno.com/
Db_URL: https://innopedia.kyinno.com/DataBase/CellLine.aspx?file=%s.pdf
Term. : No
Cat   : Cell line collections
//
Abbrev: LiGeA
Name  : Cancer cell LInes GEne fusions portAl
Server: http://hpc-bioinformatics.cineca.it/fusion/main
Db_URL: http://hpc-bioinformatics.cineca.it/fusion/cell_line/%s
Term. : No
Cat   : Polymorphism and mutation databases
//
Abbrev: LIMORE
Name  : Liver Cancer Model Repository
Server: https://www.picb.ac.cn/limore/home
Db_URL: https://www.picb.ac.cn/limore/cellLines/single?para=%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: LINCS_HMS
Name  : Harvard Medical School (HMS) LINCS Center
Server: http://lincs.hms.harvard.edu/db/cells/
Db_URL: http://lincs.hms.harvard.edu/db/cells/%s/
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: LINCS_LDP
Name  : LINCS Data Portal
Server: http://lincsportal.ccs.miami.edu/cells/
Db_URL: http://lincsportal.ccs.miami.edu/cells/#/view/%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: Lonza
Name  : Lonza Cell and Transfection Database
Server: https://knowledge.lonza.com
Db_URL: https://knowledge.lonza.com/cell?id=%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: MCCL
Name  : Molecular Connection Cell Line ontology
Server: https://bioportal.bioontology.org/ontologies/MCCL
Db_URL: None
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: MeSH
Name  : Medical Subject Headings
Server: https://www.ncbi.nlm.nih.gov/mesh
Db_URL: https://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?field=uid&term=%s
Term. : No
Cat   : Medical resources
//
Abbrev: MetaboLights
Name  : MetaboLights database for metabolomics experiments and derived information
Server: https://www.ebi.ac.uk/metabolights/
Db_URL: https://www.ebi.ac.uk/metabolights/%s
Term. : No
Cat   : Metabolomic databases
//
Abbrev: MGI
Name  : Mouse Genome Database (MGD) from Mouse Genome Informatics
Server: http://www.informatics.jax.org
Db_URL: http://www.informatics.jax.org/marker/%s
Term. : Yes
Cat   : Organism-specific databases
//
Abbrev: Millipore
Name  : Merck Millipore (EMD Millipore)
Server: https://www.merckmillipore.com/
Db_URL: https://www.merckmillipore.com/catalogue/item/%s
Term. : No
Cat   : Cell line collections
//
Abbrev: MMRRC
Name  : Mutant Mouse Resource & Research Centers
Server: https://www.mmrrc.org/
Db_URL: https://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=%s
Term. : No
Cat   : Cell line collections
//
Abbrev: NCBI_Iran
Name  : National Cell Bank of Iran
Server: http://en.pasteur.ac.ir/pages.aspx?id=823
Db_URL: None
Term. : No
Cat   : Cell line collections
//
Abbrev: NCBI_TaxID
Name  : NCBI taxonomy database
Server: https://www.ncbi.nlm.nih.gov/taxonomy
Db_URL: https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=%s&lvl=3
Term. : Yes
Cat   : Taxonomy
//
Abbrev: NCI-DTP
Name  : NCI Development Therapeutics Program
Server: https://dtp.cancer.gov/repositories/
Db_URL: None
Term. : No
Cat   : Cell line collections
//
Abbrev: NCIt
Name  : NCI thesaurus
Server: https://ncit.nci.nih.gov/ncitbrowser
Db_URL: https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=%s
Term. : Yes
Cat   : Medical resources
//
Abbrev: NHCDR
Name  : NINDS Human Cell and Data Repository
Server: https://stemcells.nindsgenetics.org
Db_URL: https://stemcells.nindsgenetics.org?line=%s
Term. : No
Cat   : Cell line collections
//
Abbrev: NISES
Name  : National Institute of Sericultural and Entomological Science Cell Database
Server: https://web.archive.org/web/20160709065305/https://www.gene.affrc.go.jp/ex-nises/NISESCells/CellindexE1.html
Db_URL: None
Term. : No
Cat   : Cell line collections
//
Abbrev: NRFC
Name  : National Repository of Fish Cell Line
Server: https://mail.nbfgr.res.in/nrfc/
Db_URL: None
Term. : No
Cat   : Cell line collections
//
Abbrev: ORDO
Name  : Orphanet Rare Disease Ontology
Server: https://www.ebi.ac.uk/ols/ontologies/ordo
Db_URL: https://www.ebi.ac.uk/ols/ontologies/ordo/terms?iri=http://www.orpha.net/ORDO/%s
Term. : Yes
Cat   : Medical resources
//
Abbrev: Patent
Name  : Google Patents
Server: https://patents.google.com
Db_URL: https://patents.google.com/patent/%s
Term. : No
Cat   : Reference resources
//
Abbrev: PerkinElmer
Name  : PerkinElmer cell line collection
Server: https://www.perkinelmer.com/
Db_URL: https://www.perkinelmer.com/searchresult?searchName=%s
Term. : No
Cat   : Cell line collections
//
Abbrev: PharmacoDB
Name  : PharmacoDB integrative pharmacogenomic database
Server: https://pharmacodb.ca/
Db_URL: https://pharmacodb.ca/cell_lines/%s
Term. : No
Cat   : Chemistry resources
//
Abbrev: PRIDE
Name  : PRoteomics IDEntifications archive
Server: https://www.ebi.ac.uk/pride/archive/
Db_URL: https://www.ebi.ac.uk/pride/archive/projects/%s
Term. : No
Cat   : Proteomic databases
//
Abbrev: Progenetix
Name  : Cancer genome data @ progenetix.org
Server: https://progenetix.org/
Db_URL: https://progenetix.org/biosamples/by-curie/cellosaurus:%s
Term. : No
Cat   : Polymorphism and mutation databases
//
Abbrev: PubChem
Name  : PubChem compound database
Server: https://pubchem.ncbi.nlm.nih.gov
Db_URL: https://pubchem.ncbi.nlm.nih.gov/compound/%s
Term. : Yes
Cat   : Chemistry resources
//
Abbrev: PubChem_Cell_line
Name  : PubChem compound database; cell line pages
Server: https://pubchem.ncbi.nlm.nih.gov
Db_URL: https://pubchem.ncbi.nlm.nih.gov/cell/%s
Term. : No
Cat   : Chemistry resources
//
Abbrev: PubMed
Name  : PubMed
Server: https://www.ncbi.nlm.nih.gov/pubmed
Db_URL: https://www.ncbi.nlm.nih.gov/pubmed/%s
Term. : No
Cat   : Reference resources
//
Abbrev: RCB
Name  : RIKEN Bioresource Center Cell Bank
Server: https://cell.brc.riken.jp/en/rcb
Db_URL: http://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=%s&lang=En
Term. : No
Cat   : Cell line collections
//
Abbrev: RGD
Name  : Rat Genome Database
Server: https://rgd.mcw.edu
Db_URL: https://rgd.mcw.edu/rgdweb/report/gene/main.html?id=%s
Term. : Yes
Cat   : Organism-specific databases
//
Abbrev: Rockland
Name  : Rockland cell line products
Server: https://www.rockland.com/categories/cell-lines-and-lysates/
Db_URL: https://www.rockland.com/search/?searchString=%s
Term. : No
Cat   : Cell line collections
//
Abbrev: RSCB
Name  : Royan Stem Cell Bank
Server: https://web.archive.org/web/20201001144644/http://www.royaninstitute.org/cmsen/index.php?option=com_content&task=view&id=205&Itemid=40
Db_URL: None
Term. : No
Cat   : Cell line collections
//
Abbrev: SKIP
Name  : Stemcell Knowledge and Information Portal
Server: https://www.skip.stemcellinformatics.org/en/
Db_URL: https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: SKY/M-FISH/CGH
Name  : SKY/M-FISH and CGH database
Server: https://www.ncbi.nlm.nih.gov/dbvar/studies/nstd136/
Db_URL: None
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: SLKBase
Name  : SUM Breast Cancer Cell Line Knowledge Base
Server: https://sumlineknowledgebase.com/
Db_URL: https://sumlineknowledgebase.com/?page_id=%s
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: TKG
Name  : Tohoku University cell line catalog
Server: http://www2.idac.tohoku.ac.jp/dep/ccr/
Db_URL: http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvo10%n/%s.html
        Note: n% is the second digit of the cell line AC and %s is the cell line AC without the 'TKG'
        Example: for "DR   TKG; TKG 0377": %n=3 %s=0377
Term. : No
Cat   : Cell line collections
//
Abbrev: TNGB
Name  : Telethon Network of Genetic Biobanks
Server: http://biobanknetwork.telethon.it/
Db_URL: http://biobanknetwork.telethon.it/Sample/View?sampleId=%s
Term. : No
Cat   : Cell line collections
//
Abbrev: TOKU-E
Name  : TOKU-E Cell-culture Database
Server: http://cell-lines.toku-e.com
Db_URL: http://cell-lines.toku-e.com/Cell-Lines_%s.html
Term. : No
Cat   : Cell line databases/resources
//
Abbrev: UBERON
Name  : Uber-anatomy ontology
Server: https://uberon.github.io/
Db_URL: https://www.ebi.ac.uk/ols/ontologies/cl/terms?iri=http://purl.obolibrary.org/obo/%s
Term. : Yes
Cat   : Anatomy/cell type resources
//
Abbrev: UniProtKB
Name  : UniProt knowledgebase
Server  https://www.uniprot.org
Db_URL: https://www.uniprot.org/uniprotkb/%s/entry
Term. : No
Cat   : Sequence databases
//
Abbrev: VGNC
Name  : Vertebrate Gene Nomenclature Committee Database
Server: https://vertebrate.genenames.org/
Db_URL: https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/VGNC:%s
Term. : Yes
Cat   : Organism-specific databases
//
Abbrev: WiCell
Name  : WiCell Research Institute Cell Collection
Server: https://www.wicell.org
Db_URL: https://www.wicell.org/home/stem-cells/catalog-of-stem-cell-lines/%s.cmsx?closable=true
Term. : No
Cat   : Cell line collections
//
Abbrev: Wikidata
Name  : Wikidata
Server: https://www.wikidata.org/wiki/Wikidata:Main_Page
Db_URL: https://www.wikidata.org/wiki/%s
Term. : No
Cat   : Encyclopedic resources
//
Abbrev: Ximbio
Name  : Ximbio reagents online portal
Server: https://ximbio.com
Db_URL: https://ximbio.com/reagent/%s
Term. : No
Cat   : Cell line collections
//
