.gitignore
.pre-commit-config.yaml
LICENSE
README.md
mkdocs.yml
pyproject.toml
.github/workflows/docs.yml
docs/getting-started.md
docs/index.md
docs/assets/filters.png
docs/assets/filters.svg
docs/assets/logo.svg
docs/assets/pipeline_overview.png
docs/assets/pipeline_overview.svg
docs/assets/recipe_comparison.png
docs/assets/recipe_comparison.svg
docs/assets/samplers.png
docs/assets/samplers.svg
docs/assets/tissue_detectors.png
docs/assets/tissue_detectors.svg
docs/assets/transforms.png
docs/assets/transforms.svg
docs/components/backends.md
docs/components/dataset-adapters.md
docs/components/filters.md
docs/components/sampling.md
docs/components/tissue-detection.md
docs/components/transforms.md
docs/concepts/architecture.md
docs/concepts/online-patching.md
docs/integration/benchmarking.md
docs/integration/ddp.md
docs/integration/pytorch-dataloader.md
docs/integration/wandb.md
docs/recipes/gpfm.md
docs/recipes/index.md
docs/recipes/midnight.md
docs/recipes/prov-gigapath.md
docs/recipes/uni.md
docs/recipes/virchow.md
examples/demo_pipeline.py
scripts/_helpers.py
scripts/plot_filters.py
scripts/plot_pipeline_overview.py
scripts/plot_recipe_comparison.py
scripts/plot_samplers.py
scripts/plot_tissue_detectors.py
scripts/plot_transforms.py
src/wsistream/__init__.py
src/wsistream/benchmark.py
src/wsistream/pipeline.py
src/wsistream/slide.py
src/wsistream/torch.py
src/wsistream/torch_monitor.py
src/wsistream/types.py
src/wsistream/viz.py
src/wsistream.egg-info/PKG-INFO
src/wsistream.egg-info/SOURCES.txt
src/wsistream.egg-info/dependency_links.txt
src/wsistream.egg-info/requires.txt
src/wsistream.egg-info/top_level.txt
src/wsistream/backends/__init__.py
src/wsistream/backends/base.py
src/wsistream/backends/openslide.py
src/wsistream/backends/tiffslide.py
src/wsistream/datasets/__init__.py
src/wsistream/datasets/base.py
src/wsistream/datasets/tcga.py
src/wsistream/filters/__init__.py
src/wsistream/filters/base.py
src/wsistream/filters/hsv.py
src/wsistream/sampling/__init__.py
src/wsistream/sampling/base.py
src/wsistream/sampling/grid.py
src/wsistream/sampling/multi_magnification.py
src/wsistream/sampling/random.py
src/wsistream/tissue/__init__.py
src/wsistream/tissue/base.py
src/wsistream/tissue/clam.py
src/wsistream/tissue/combined.py
src/wsistream/tissue/hsv.py
src/wsistream/tissue/otsu.py
src/wsistream/transforms/__init__.py
src/wsistream/transforms/albumentations.py
src/wsistream/transforms/base.py
src/wsistream/transforms/geometric.py
src/wsistream/transforms/hed.py
src/wsistream/transforms/normalize.py
src/wsistream/transforms/resize.py
tests/README.md
tests/__init__.py
tests/conftest.py
tests/test_benchmark.py
tests/test_benchmarks.py
tests/test_datasets.py
tests/test_e2e.py
tests/test_filters.py
tests/test_pipeline.py
tests/test_sampling.py
tests/test_slide.py
tests/test_tissue.py
tests/test_torch.py
tests/test_torch_e2e.py
tests/test_torch_monitor.py
tests/test_transforms.py
tests/test_types.py
tests/test_viz.py