LICENSE.md
MANIFEST.in
README.md
VERSION
setup.cfg
setup.py
src/tpp.py
src/transit.py
src/pytransit/__init__.py
src/pytransit/__main__.py
src/pytransit/draw_trash.py
src/pytransit/fileDisplay.py
src/pytransit/images.py
src/pytransit/norm_tools.py
src/pytransit/qcDisplay.py
src/pytransit/stat_tools.py
src/pytransit/tnseq_tools.py
src/pytransit/transit_gui.py
src/pytransit/transit_tools.py
src/pytransit/trash.py
src/pytransit/view_trash.py
src/pytransit/analysis/__init__.py
src/pytransit/analysis/base.py
src/pytransit/analysis/binomial.py
src/pytransit/analysis/example.py
src/pytransit/analysis/griffin.py
src/pytransit/analysis/gumbel.py
src/pytransit/analysis/hmm.py
src/pytransit/analysis/rankproduct.py
src/pytransit/analysis/resampling.py
src/pytransit/analysis/tn5gaps.py
src/pytransit/data/cholesterol_H37Rv_merged.wig
src/pytransit/data/cholesterol_H37Rv_rep1.wig
src/pytransit/data/cholesterol_H37Rv_rep2.wig
src/pytransit/data/cholesterol_H37Rv_rep3.wig
src/pytransit/data/glycerol_H37Rv_merged.wig
src/pytransit/data/glycerol_H37Rv_rep1.wig
src/pytransit/data/glycerol_H37Rv_rep2.wig
src/pytransit/data/gumbel_glycerol_reads_rep1_s10000_b500_t1.dat
src/pytransit/data/hmm_glycerol_sites.dat
src/pytransit/data/hmm_glycerol_sites_genes.dat
src/pytransit/data/resampling_output.dat
src/pytransit/data/resampling_results_glyc_chol.dat
src/pytransit/genomes/BCG.fna
src/pytransit/genomes/BCG.prot_table
src/pytransit/genomes/H37Rv.fna
src/pytransit/genomes/H37Rv.prot_table
src/pytransit/genomes/H37RvBD.fna
src/pytransit/genomes/H37RvBD.prot_table
src/pytransit/genomes/H37RvBD_mod3.prot_table
src/pytransit/genomes/H37RvMA2.fna
src/pytransit/genomes/H37RvMA2.prot_table
src/pytransit/genomes/genomes.html
src/pytransit/genomes/genomes.html~
src/pytransit/genomes/mc2_155_tamu.fna
src/pytransit/genomes/mc2_155_tamu.prot_table
tnseq_transit.egg-info/PKG-INFO
tnseq_transit.egg-info/SOURCES.txt
tnseq_transit.egg-info/dependency_links.txt
tnseq_transit.egg-info/entry_points.txt
tnseq_transit.egg-info/requires.txt
tnseq_transit.egg-info/top_level.txt