# TRANSIT

Welcome! This is the distribution for the TRANSIT and TPP tools developed by the Ioerger Lab.

TRANSIT is a tool for the analysis of Tn-Seq data. It provides an easy to use graphical interface and access to three different analysis methods that allow the user to determine essentiality in a single condition as well as between conditions.


## Instructions

For full instructions on how to install and run TRANSIT (and the optional pre-processor, TPP), please see the documentation included in this distribution ("doc" folder) or visit the following web pages:


http://saclab.tamu.edu/essentiality/transit/transit.html

http://saclab.tamu.edu/essentiality/transit/TPP.html


## Datasets

The TRANSIT distribution comes with some example .wig files in the data/ directory, as well as an example annotation file (.prot\_table format) in the genomes/ directory. Additional genomes may be found on the following website:
 
http://saclab.tamu.edu/essentiality/transit/genomes/


## Copyright Information

Source code for TRANSIT and TPP are available open source under the terms of the GNU General Public License (Version 3.0) as published by the Free Software Foundation. For more information on this license, please see the included LICENSE.md file or visit their website at:

http://www.gnu.org/licenses/gpl.html



