MANIFEST.in
README.md
setup.py
h1d/InteractionFreq.sh
h1d/MultiSampleScore.py
h1d/MultiTypeScore.py
h1d/__init__.py
h1d/__main__.py
h1d/calcuDiffCI.py
h1d/calculateMetrics.py
h1d/calculateTwoSample.py
h1d/callDirectionalTAD.py
h1d/calldTADAllchr.py
h1d/compareEmission.py
h1d/discrete.py
h1d/loadfile.py
h1d/notused_HiCmetric.py
h1d/plotMetrics.py
h1d/plotTwoSample.py
h1d/stripe.py
h1d.egg-info/PKG-INFO
h1d.egg-info/SOURCES.txt
h1d.egg-info/dependency_links.txt
h1d.egg-info/entry_points.txt
h1d.egg-info/requires.txt
h1d.egg-info/top_level.txt
h1d/extract/convert_JuicerDump_to_dense.py
h1d/extract/coolerdump.sh
h1d/extract/hiccup.sh
h1d/extract/makeMatrixIntra.sh
h1d/extract/makeMatrixIntra_old.sh
h1d/extract/makeMatrixIntra_wasted.sh
h1d/gd/makeDensity.sh
h1d/jc/jctool_1.11.04.jar