AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
docs/Makefile
docs/api.rst
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index_stage1.rst
docs/index_stage2.rst
docs/indices.rst
docs/_templates/autosummary/class.rst
docs/_templates/autosummary/exception.rst
docs/_templates/autosummary/function.rst
docs/_templates/autosummary/module.rst
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hstrat/__init__.py
hstrat.egg-info/PKG-INFO
hstrat.egg-info/SOURCES.txt
hstrat.egg-info/dependency_links.txt
hstrat.egg-info/requires.txt
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hstrat/genome_instrumentation/stratum_ordered_stores/_detail/__init__.py
hstrat/hstrat/__init__.py
hstrat/juxtaposition/__init__.py
hstrat/juxtaposition/_calc_definitive_max_rank_of_first_retained_disparity_between.py
hstrat/juxtaposition/_calc_definitive_max_rank_of_last_retained_commonality_between.py
hstrat/juxtaposition/_calc_definitive_min_ranks_since_first_retained_disparity_with.py
hstrat/juxtaposition/_calc_definitive_min_ranks_since_last_retained_commonality_with.py
hstrat/juxtaposition/_calc_min_implausible_spurious_consecutive_differentia_collisions_between.py
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hstrat/juxtaposition/_calc_ranks_since_last_retained_commonality_with.py
hstrat/juxtaposition/_diff_retained_ranks.py
hstrat/juxtaposition/_get_last_common_stratum_between.py
hstrat/juxtaposition/_get_nth_common_rank_between.py
hstrat/juxtaposition/_impl/__init__.py
hstrat/juxtaposition/_impl/_dispatch_impl.py
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hstrat/juxtaposition/_impl_column/_calc_rank_of_first_retained_disparity_between_bsearch.py
hstrat/juxtaposition/_impl_column/_calc_rank_of_first_retained_disparity_between_generic.py
hstrat/juxtaposition/_impl_column/_calc_rank_of_last_retained_commonality_between.py
hstrat/juxtaposition/_impl_column/_calc_rank_of_last_retained_commonality_between_bsearch.py
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hstrat/juxtaposition/_impl_column/_iter_mutual_ranks.py
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hstrat/juxtaposition/_impl_specimen/__init__.py
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hstrat/juxtaposition/_impl_specimen/_calc_rank_of_parity_segue_between.py
hstrat/juxtaposition/_impl_specimen/_calc_rank_of_parity_segue_between_naive.py
hstrat/juxtaposition/_impl_specimen/_iter_mutual_rank_indices.py
hstrat/juxtaposition/_impl_specimen/_iter_mutual_ranks.py
hstrat/juxtaposition/_impl_specimen/_iter_ranks_of_retained_commonality_between.py
hstrat/phylogenetic_inference/__init__.py
hstrat/phylogenetic_inference/estimators/__init__.py
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hstrat/phylogenetic_inference/estimators/_estimate_rank_of_mrca_naive.py
hstrat/phylogenetic_inference/estimators/_estimate_rank_of_mrca_unbiased.py
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hstrat/phylogenetic_inference/pairwise/_calc_patristic_distance_bounds_between.py
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hstrat/phylogenetic_inference/pairwise/_calc_rank_of_mrca_bounds_provided_confidence_level.py
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hstrat/phylogenetic_inference/pairwise/_calc_ranks_since_mrca_bounds_provided_confidence_level.py
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hstrat/phylogenetic_inference/pairwise/_calc_ranks_since_mrca_uncertainty_with.py
hstrat/phylogenetic_inference/pairwise/_does_definitively_have_no_common_ancestor.py
hstrat/phylogenetic_inference/pairwise/_does_have_any_common_ancestor.py
hstrat/phylogenetic_inference/pairwise/_estimate_patristic_distance_between.py
hstrat/phylogenetic_inference/pairwise/_estimate_rank_of_mrca_between.py
hstrat/phylogenetic_inference/pairwise/_estimate_ranks_since_mrca_with.py
hstrat/phylogenetic_inference/pairwise/_impl/__init__.py
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hstrat/phylogenetic_inference/pairwise/_impl/_estimate_rank_of_mrca_naive.py
hstrat/phylogenetic_inference/pairwise/_impl/_estimate_rank_of_mrca_unbiased.py
hstrat/phylogenetic_inference/pairwise/_impl/_extract_common_retained_ranks_through_first_retained_disparity.py
hstrat/phylogenetic_inference/population/__init__.py
hstrat/phylogenetic_inference/population/_build_distance_matrix_biopython.py
hstrat/phylogenetic_inference/population/_build_distance_matrix_numpy.py
hstrat/phylogenetic_inference/population/_calc_rank_of_earliest_detectable_mrca_among.py
hstrat/phylogenetic_inference/population/_calc_rank_of_mrca_bounds_among.py
hstrat/phylogenetic_inference/population/_calc_rank_of_mrca_uncertainty_among.py
hstrat/phylogenetic_inference/population/_does_definitively_share_no_common_ancestor.py
hstrat/phylogenetic_inference/population/_does_share_any_common_ancestor.py
hstrat/phylogenetic_inference/priors/_ArbitraryPrior.py
hstrat/phylogenetic_inference/priors/_BubbleWrappedPrior.py
hstrat/phylogenetic_inference/priors/_ExponentialPrior.py
hstrat/phylogenetic_inference/priors/_GeometricPrior.py
hstrat/phylogenetic_inference/priors/_UniformPrior.py
hstrat/phylogenetic_inference/priors/__init__.py
hstrat/phylogenetic_inference/priors/_detail/_PriorBase.py
hstrat/phylogenetic_inference/priors/_detail/__init__.py
hstrat/phylogenetic_inference/tree/__init__.py
hstrat/phylogenetic_inference/tree/_build_tree.py
hstrat/phylogenetic_inference/tree/_build_tree_nj.py
hstrat/phylogenetic_inference/tree/_build_tree_trie.py
hstrat/phylogenetic_inference/tree/_build_tree_trie_ensemble.py
hstrat/phylogenetic_inference/tree/_build_tree_upgma.py
hstrat/phylogenetic_inference/tree/_impl/_TrieInnerNode.py
hstrat/phylogenetic_inference/tree/_impl/_TrieLeafNode.py
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hstrat/phylogenetic_inference/tree/_impl/_estimate_origin_times.py
hstrat/phylogenetic_inference/tree/_impl/_find_chronological_root.py
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hstrat/phylogenetic_inference/tree/_impl/_time_calibrate_tree.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_AssignDestructionTimeYoungestPlusOneTriePostprocessor.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_AssignOriginTimeExpectedValueTriePostprocessor.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_AssignOriginTimeNaiveTriePostprocessor.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_AssignOriginTimeNodeRankTriePostprocessor.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_AssignOriginTimeSampleNaiveTriePostprocessor.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_CompoundTriePostprocessor.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_PeelBackConjoinedLeavesTriePostprocessor.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_SampleAncestralRollbacksTriePostprocessor.py
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hstrat/phylogenetic_inference/tree/trie_postprocess/_detail/_TriePostprocessorBase.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_detail/__init__.py
hstrat/serialization/__init__.py
hstrat/serialization/_assemblage_from_records.py
hstrat/serialization/_col_from_int.py
hstrat/serialization/_col_from_packet.py
hstrat/serialization/_col_from_packet_buffer.py
hstrat/serialization/_col_from_records.py
hstrat/serialization/_col_to_dataframe.py
hstrat/serialization/_col_to_int.py
hstrat/serialization/_col_to_packet.py
hstrat/serialization/_col_to_records.py
hstrat/serialization/_col_to_specimen.py
hstrat/serialization/_pack_differentiae.py
hstrat/serialization/_pack_differentiae_bytes.py
hstrat/serialization/_pack_differentiae_str.py
hstrat/serialization/_policy_from_records.py
hstrat/serialization/_policy_to_records.py
hstrat/serialization/_pop_from_records.py
hstrat/serialization/_pop_to_assemblage.py
hstrat/serialization/_pop_to_dataframe.py
hstrat/serialization/_pop_to_records.py
hstrat/serialization/_specimen_from_records.py
hstrat/serialization/_unassemblage_from_records.py
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hstrat/serialization/_unpack_differentiae_bytes.py
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hstrat/serialization/_impl/_DEFAULT_PACKET_NUM_STRATA_DEPOSITED_BYTE_WIDTH.py
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hstrat/serialization/_impl/_col_records_from_pop_records.py
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hstrat/serialization/_impl/_stringify_packed_differentia_bytes.py
hstrat/stratum_retention_strategy/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_detail/_PolicyCouplerBase.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_detail/_PolicyCouplerFactory.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_detail/_PolicySpecBase.py
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hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_CalcMrcaUncertaintyAbsUpperBoundPessimalRankBruteForce.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_CalcMrcaUncertaintyAbsUpperBoundWorstCase.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_CalcMrcaUncertaintyRelExactFromAbs.py
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hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_CalcMrcaUncertaintyRelUpperBoundPessimalRankBruteForce.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_CalcMrcaUncertaintyRelUpperBoundWorstCase.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_CalcNumStrataRetainedUpperBoundWorstCase.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_GenDropRanksFromPredKeepRank.py
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hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_enact/_GenDropRanks.py
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