bowtie
bowtie2
bwa
gawk
picard-tools
pigz
python3-numpy
python3-six
python3-sklearn
python3-yaml
r-base
seqtk
tabix
zip

# required for bedtools (old CLI)
python

# Required by FastQC
default-jre
libfindbin-libs-perl

# Required for deeptools
libpython3.8-dev

# Required for MultiQC
python3-setuptools
