# Core dependencies
numpy>=1.24,<3
pandas==2.1.4
biopython>=1.81

# Visualization
matplotlib
seaborn

# Machine learning / Deep learning
torch
openspliceai

# Biology-specific tools
seqmat

# NOTE: pangolin must be installed separately:
# pip install git+https://github.com/tkzeng/Pangolin.git

# NOTE: TITER (TIS prediction) requires keras, install with:
# pip install keras tensorflow
# Download TITER models from: https://github.com/zhangsaithu/titer