LICENSE.txt
README.md
pyproject.toml
src/vlab4mic/__init__.py
src/vlab4mic/download.py
src/vlab4mic/experiments.py
src/vlab4mic/sweep_generator.py
src/vlab4mic/workflows.py
src/vlab4mic.egg-info/PKG-INFO
src/vlab4mic.egg-info/SOURCES.txt
src/vlab4mic.egg-info/dependency_links.txt
src/vlab4mic.egg-info/entry_points.txt
src/vlab4mic.egg-info/requires.txt
src/vlab4mic.egg-info/top_level.txt
src/vlab4mic/analysis/__init__.py
src/vlab4mic/analysis/_plots.py
src/vlab4mic/analysis/metrics.py
src/vlab4mic/analysis/sweep.py
src/vlab4mic/configs/__init__.py
src/vlab4mic/configs/parameter_settings.yaml
src/vlab4mic/configs/acquisition/__init__.py
src/vlab4mic/configs/acquisition/_template_.yaml
src/vlab4mic/configs/fluorophores/AF488.yaml
src/vlab4mic/configs/fluorophores/AF647.yaml
src/vlab4mic/configs/fluorophores/__init__.py
src/vlab4mic/configs/fluorophores/_template_.yaml
src/vlab4mic/configs/modalities/AiryScan.yaml
src/vlab4mic/configs/modalities/AiryScan_Thev2016.yaml
src/vlab4mic/configs/modalities/Confocal.yaml
src/vlab4mic/configs/modalities/Confocal_Thev2016.yaml
src/vlab4mic/configs/modalities/Reference.yaml
src/vlab4mic/configs/modalities/SMLM.yaml
src/vlab4mic/configs/modalities/STED.yaml
src/vlab4mic/configs/modalities/STED_Thev2016.yaml
src/vlab4mic/configs/modalities/STORM_Thev2016.yaml
src/vlab4mic/configs/modalities/Widefield.yaml
src/vlab4mic/configs/modalities/Widefield_Thev2016.yaml
src/vlab4mic/configs/modalities/__init__.py
src/vlab4mic/configs/modalities/_template_.yaml
src/vlab4mic/configs/probes/Antibody.yaml
src/vlab4mic/configs/probes/CCP_heavy_chain_Cterminal.yaml
src/vlab4mic/configs/probes/GFP.yaml
src/vlab4mic/configs/probes/GFP_w_nanobody.yaml
src/vlab4mic/configs/probes/HIV_capsid_p24_direct.yaml
src/vlab4mic/configs/probes/Linker.yaml
src/vlab4mic/configs/probes/NHS_ester.yaml
src/vlab4mic/configs/probes/NPC_Nup96_Cterminal_direct.yaml
src/vlab4mic/configs/probes/Nanobody.yaml
src/vlab4mic/configs/probes/SNAP-tag.yaml
src/vlab4mic/configs/probes/__init__.py
src/vlab4mic/configs/probes/_template_.yaml
src/vlab4mic/configs/probes/anti-p24_primary_antibody_HIV.yaml
src/vlab4mic/configs/probes/mMaple.yaml
src/vlab4mic/configs/structures/1HZH.yaml
src/vlab4mic/configs/structures/1XI5.yaml
src/vlab4mic/configs/structures/2RCJ.yaml
src/vlab4mic/configs/structures/3J3Y.yaml
src/vlab4mic/configs/structures/7R5K.yaml
src/vlab4mic/configs/structures/8GMO.yaml
src/vlab4mic/configs/structures/__init__.py
src/vlab4mic/configs/structures/_template_.yaml
src/vlab4mic/configs/virtualsample/__init__.py
src/vlab4mic/configs/virtualsample/_template_.yaml
src/vlab4mic/configs/virtualsample/square1x1um_randomised.yaml
src/vlab4mic/generate/__init__.py
src/vlab4mic/generate/coordinates_field.py
src/vlab4mic/generate/imaging.py
src/vlab4mic/generate/labelled_instance.py
src/vlab4mic/generate/labels.py
src/vlab4mic/generate/molecular_structure.py
src/vlab4mic/generate/psfs.py
src/vlab4mic/utils/__init__.py
src/vlab4mic/utils/data_format/__init__.py
src/vlab4mic/utils/data_format/configuration_format.py
src/vlab4mic/utils/data_format/structural_format.py
src/vlab4mic/utils/data_format/visualisation.py
src/vlab4mic/utils/io/__init__.py
src/vlab4mic/utils/io/text.py
src/vlab4mic/utils/io/tiff.py
src/vlab4mic/utils/io/yaml_functions.py
src/vlab4mic/utils/sample/__init__.py
src/vlab4mic/utils/sample/arrays.py
src/vlab4mic/utils/transform/__init__.py
src/vlab4mic/utils/transform/cif_builder.py
src/vlab4mic/utils/transform/datatype.py
src/vlab4mic/utils/transform/image_convolution.py
src/vlab4mic/utils/transform/noise.py
src/vlab4mic/utils/transform/normals.py
src/vlab4mic/utils/transform/points_transforms.py
src/vlab4mic/utils/transform/structural_integrity.py
src/vlab4mic/utils/visualisation/__init__.py
src/vlab4mic/utils/visualisation/matplotlib_plots.py
tests/test_coordinate_field.py
tests/test_experiment.py
tests/test_image_generation.py
tests/test_incomplete_labelling.py
tests/test_labelledparticles.py
tests/test_labels.py
tests/test_load_pdbcif.py
tests/test_sequential_labelling.py
tests/test_sweeps.py