.gitignore
CONTRIBUTING.md
Dockerfile
LICENSE
MANIFEST.in
Makefile
README.md
app.json
docker-compose-test.yml
docker-compose.yml
entrypoint.sh
environment.yml
mkdocs.yml
pyproject.toml
requirements-dev.txt
setup.cfg
.github/workflows/codeql.yml
.github/workflows/docker-image.yml
.github/workflows/documentation.yml
.github/workflows/macos-release.yml
.github/workflows/pythonpackage.yml
.github/workflows/pythonpublish.yml
.github/workflows/windows-release.yml
InnoSetup/InnoSetupScript.iss
docs/developer-notes.md
docs/gallery.md
docs/gui.md
docs/index.md
docs/install.md
docs/peak_properties.png
docs/quickstart.md
docs/targets.md
docs/gallery/MINT-interface-1.png
docs/gallery/Mint-plate-layout.png
docs/gallery/analysis-pca.png
docs/image/MINT-logo.jpg
docs/image/MINT-logo.png
docs/image/add-metabolites.png
docs/image/cluster_analysis_wide.png
docs/image/clustering.png
docs/image/demo_Saureus_sample_raw.png
docs/image/demo_Saureus_sample_raw_succinate.png
docs/image/distributions.png
docs/image/extracted_peaks.png
docs/image/flowchart.png
docs/image/general-selection-elements.png
docs/image/heatmap-correlation.png
docs/image/heatmap.png
docs/image/hierarchical-clustering.png
docs/image/jupyter-gui.png
docs/image/jupyter.png
docs/image/jupyter_results.png
docs/image/manual-peak-optimization.png
docs/image/metadata.png
docs/image/ms-files.png
docs/image/pca.png
docs/image/peakfile-selected.png
docs/image/peaklist.png
docs/image/peaklist_settings.png
docs/image/plotting-example-1.png
docs/image/plotting_results_bar.png
docs/image/plotting_results_boxen.png
docs/image/plotting_settings.png
docs/image/processing.png
docs/image/target-optimization.png
docs/image/targets.png
docs/image/workspaces.png
docs/quickstart/01-demo-plot.png
docs/quickstart/02-demo-plot.png
docs/quickstart/03-demo-plot.png
docs/quickstart/04-demo-plot.png
docs/quickstart/05-demo-plot.png
docs/quickstart/create-workspace.png
docs/quickstart/demo-workspace-is-activated.png
docs/quickstart/first-start.png
docs/quickstart/metadata-added.png
docs/quickstart/metadata-table.png
docs/quickstart/ms-files-uploaded.png
docs/quickstart/peak-optimization.png
docs/quickstart/peak-preview.png
docs/quickstart/peak-preview_.png
docs/quickstart/run-mint.png
docs/quickstart/targets-table.png
docs/quickstart/workspace-activated.png
flaskapp/app.json
flaskapp/config.py
flaskapp/flaskapp.py
flaskapp/serve.py
flaskapp/wsgi.py
flaskapp/app/extensions.py
flaskapp/app/flaskapp.py
flaskapp/app/forms.py
flaskapp/app/models.py
flaskapp/app/webapp.py
flaskapp/app/assets/MINT-logo-header.png
flaskapp/app/static/MINT-logo.jpg
flaskapp/app/templates/base.html
flaskapp/app/templates/index.html
flaskapp/app/templates/login.html
flaskapp/app/templates/register.html
flaskapp/migrations/README
flaskapp/migrations/alembic.ini
flaskapp/migrations/env.py
flaskapp/migrations/script.py.mako
flaskapp/migrations/versions/8e9c46887a13_init.py
pyinstaller/Mint.spec
pyinstaller/hooks/hook-dash.py
pyinstaller/hooks/hook-dash_extensions.py
pyinstaller/hooks/hook-dash_tabulator.py
pyinstaller/hooks/hook-ms_mint.py
pyinstaller/hooks/hook-ms_mint_app.py
pyinstaller/hooks/hook-pyarrow.py
pyinstaller/hooks/hook-pymzml.py
src/ms_mint_app/__init__.py
src/ms_mint_app/_version.py
src/ms_mint_app/app.py
src/ms_mint_app/auth.py
src/ms_mint_app/database.py
src/ms_mint_app/filelock.py
src/ms_mint_app/messages.py
src/ms_mint_app/plugin_interface.py
src/ms_mint_app/plugin_manager.py
src/ms_mint_app/tools.py
src/ms_mint_app.egg-info/PKG-INFO
src/ms_mint_app.egg-info/SOURCES.txt
src/ms_mint_app.egg-info/dependency_links.txt
src/ms_mint_app.egg-info/entry_points.txt
src/ms_mint_app.egg-info/requires.txt
src/ms_mint_app.egg-info/top_level.txt
src/ms_mint_app/assets/MINT-logo-header.png
src/ms_mint_app/assets/dataSorted.js
src/ms_mint_app/assets/favicon.ico
src/ms_mint_app/assets/logo.png
src/ms_mint_app/plugins/__init__.py
src/ms_mint_app/plugins/analysis.py
src/ms_mint_app/plugins/metadata.py
src/ms_mint_app/plugins/ms_files.py
src/ms_mint_app/plugins/processing.py
src/ms_mint_app/plugins/quality_control.py
src/ms_mint_app/plugins/target_optimization.py
src/ms_mint_app/plugins/targets.py
src/ms_mint_app/plugins/workspaces.py
src/ms_mint_app/plugins/analysis_tools/__init__.py
src/ms_mint_app/plugins/analysis_tools/distributions.py
src/ms_mint_app/plugins/analysis_tools/heatmap.py
src/ms_mint_app/plugins/analysis_tools/hierachical_clustering.py
src/ms_mint_app/plugins/analysis_tools/pca.py
src/ms_mint_app/plugins/analysis_tools/plotting.py
src/ms_mint_app/scripts/Mint.py
src/ms_mint_app/scripts/__init__.py
src/ms_mint_app/static/Standard_Peaklist.csv
src/ms_mint_app/static/__init__.py
src/ms_mint_app/static/logo/logo.ico
src/ms_mint_app/static/logo/logo.png
src/ms_mint_app/static/logo/logo.svg
tests/test__startapp.py
tests/test__tools.py