CHANGELOG.md
CLAUDE.md
CODE_OF_CONDUCT.md
CONTRIBUTING.md
INSTALL.rst
LICENSE
MANIFEST.in
README.rst
SECURITY.md
TODO.md
USAGE.rst
pyproject.toml
setup.py
versioneer.py
cloud/download-nda-data
cloud/downloadcmd-auther
cloud/gmscalc-HCPYA
cloud/list-rapidtide-relevant-images
cloud/mount-and-run
cloud/rapidtide-HCPYA
cloud/rapidtide-cloud-test
cloud/simple-cp-test
rapidtide/Colortables.py
rapidtide/OrthoImageItem.py
rapidtide/RapidtideDataset.py
rapidtide/__init__.py
rapidtide/_version.py
rapidtide/calccoherence.py
rapidtide/calcnullsimfunc.py
rapidtide/calcsimfunc.py
rapidtide/correlate.py
rapidtide/decorators.py
rapidtide/dlfilter.py
rapidtide/dlfiltertorch.py
rapidtide/externaltools.py
rapidtide/fMRIData_class.py
rapidtide/ffttools.py
rapidtide/filter.py
rapidtide/fit.py
rapidtide/genericmultiproc.py
rapidtide/happy_supportfuncs.py
rapidtide/helper_classes.py
rapidtide/io.py
rapidtide/linfitfiltpass.py
rapidtide/makelaggedtcs.py
rapidtide/maskutil.py
rapidtide/miscmath.py
rapidtide/multiproc.py
rapidtide/patchmatch.py
rapidtide/peakeval.py
rapidtide/ppgproc.py
rapidtide/qualitycheck.py
rapidtide/refinedelay.py
rapidtide/refineregressor.py
rapidtide/resample.py
rapidtide/simFuncClasses.py
rapidtide/simfuncfit.py
rapidtide/stats.py
rapidtide/tidepoolTemplate.py
rapidtide/tidepoolTemplate.ui
rapidtide/tidepoolTemplate_alt.py
rapidtide/tidepoolTemplate_alt.ui
rapidtide/tidepoolTemplate_alt_qt6.py
rapidtide/tidepoolTemplate_big.py
rapidtide/tidepoolTemplate_big.ui
rapidtide/tidepoolTemplate_big_qt6.py
rapidtide/tidepoolTemplate_qt6.py
rapidtide/util.py
rapidtide/voxelData.py
rapidtide/wiener.py
rapidtide/wiener2.py
rapidtide.egg-info/PKG-INFO
rapidtide.egg-info/SOURCES.txt
rapidtide.egg-info/dependency_links.txt
rapidtide.egg-info/entry_points.txt
rapidtide.egg-info/requires.txt
rapidtide.egg-info/top_level.txt
rapidtide/data/examples/src/installtestdata
rapidtide/data/examples/src/testLD
rapidtide/data/examples/src/test_findmaxlag.py
rapidtide/data/examples/src/test_io
rapidtide/data/examples/src/test_mlregressallt.py
rapidtide/data/examples/src/test_rapidtidecompare
rapidtide/data/examples/src/testalign
rapidtide/data/examples/src/testatlasaverage
rapidtide/data/examples/src/testboth
rapidtide/data/examples/src/testcifti
rapidtide/data/examples/src/testcomplex
rapidtide/data/examples/src/testdecomp
rapidtide/data/examples/src/testdelayvar
rapidtide/data/examples/src/testdlfilt
rapidtide/data/examples/src/testfft
rapidtide/data/examples/src/testfileorfloat
rapidtide/data/examples/src/testfingerprint
rapidtide/data/examples/src/testfmri
rapidtide/data/examples/src/testfmridocker
rapidtide/data/examples/src/testfrozen
rapidtide/data/examples/src/testfuncs
rapidtide/data/examples/src/testglmfilt
rapidtide/data/examples/src/testhappy
rapidtide/data/examples/src/testinitdelay
rapidtide/data/examples/src/testlinfit
rapidtide/data/examples/src/testlocalflow
rapidtide/data/examples/src/testmodels
rapidtide/data/examples/src/testnewrefine
rapidtide/data/examples/src/testnoiseamp
rapidtide/data/examples/src/testoscorr
rapidtide/data/examples/src/testpad
rapidtide/data/examples/src/testppgproc
rapidtide/data/examples/src/testrefineonly
rapidtide/data/examples/src/testretro
rapidtide/data/examples/src/testretrolagtcs
rapidtide/data/examples/src/testrolloff
rapidtide/data/examples/src/testsimdata
rapidtide/data/models/model_cnn_pytorch/loss.png
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rapidtide/data/models/model_cnn_pytorch/model_meta.json
rapidtide/data/models/model_cnn_pytorch_fulldata/loss.png
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rapidtide/data/models/model_cnn_pytorch_fulldata/model_meta.json
rapidtide/data/models/model_cnnbp_pytorch_fullldata/loss.png
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rapidtide/data/models/model_cnnbp_pytorch_fullldata/model.pth
rapidtide/data/models/model_cnnbp_pytorch_fullldata/model_meta.json
rapidtide/data/models/model_cnnfft_pytorch_fulldata/loss.png
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rapidtide/data/models/model_cnnfft_pytorch_fulldata/model_meta.json
rapidtide/data/models/model_ppgattention_pytorch_w128_fulldata/loss.png
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rapidtide/data/models/model_ppgattention_pytorch_w128_fulldata/model.pth
rapidtide/data/models/model_ppgattention_pytorch_w128_fulldata/model_meta.json
rapidtide/data/models/model_revised_tf2/model.keras
rapidtide/data/models/model_revised_tf2/model_meta.json
rapidtide/data/models/model_serdar2_tf2/model.keras
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rapidtide/data/models/model_serdar_tf2/model.keras
rapidtide/data/models/model_serdar_tf2/model_meta.json
rapidtide/data/reference/ASPECTS_2mm.nii.gz
rapidtide/data/reference/ASPECTS_2mm_mask.nii.gz
rapidtide/data/reference/ASPECTS_3mm.nii.gz
rapidtide/data/reference/ASPECTS_3mm_mask.nii.gz
rapidtide/data/reference/ASPECTS_regions.txt
rapidtide/data/reference/ATTbasedFlowTerritories_split_2mm.nii.gz
rapidtide/data/reference/ATTbasedFlowTerritories_split_2mm_mask.nii.gz
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rapidtide/data/reference/HCP1200_binmask_2mm.nii.gz
rapidtide/data/reference/HCP1200_lag_2mm.nii.gz
rapidtide/data/reference/HCP1200_mask_2mm.nii.gz
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rapidtide/data/reference/HCP1200_sigma_2mm.nii.gz
rapidtide/data/reference/HCP1200_strength_2mm.nii.gz
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rapidtide/data/reference/HCP1200v2_gray_2mm.nii.gz
rapidtide/data/reference/HCP1200v2_graylaghist.json
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rapidtide/data/reference/HCP1200v2_laghist.json
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rapidtide/data/reference/HCP1200v2_maxcorr_2mm.nii.gz
rapidtide/data/reference/HCP1200v2_maxtime_2mm.nii.gz
rapidtide/data/reference/HCP1200v2_maxwidth_2mm.nii.gz
rapidtide/data/reference/HCP1200v2_negmask_2mm.nii.gz
rapidtide/data/reference/HCP1200v2_timepercentile_2mm.nii.gz
rapidtide/data/reference/HCP1200v2_white_2mm.nii.gz
rapidtide/data/reference/HCP1200v2_whitelaghist.json
rapidtide/data/reference/HCP1200v2_whitelaghist.tsv.gz
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1-seg2.xml
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1-seg2_regions.txt
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1-seg2_space-MNI152NLin6Asym_2mm.nii.gz
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1.xml
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1_regions.txt
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1_space-MNI152NLin2009cAsym_2mm.nii.gz
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1_space-MNI152NLin2009cAsym_2mm_mask.nii.gz
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1_space-MNI152NLin6Asym_2mm.nii.gz
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1_space-MNI152NLin6Asym_2mm_mask.nii.gz
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL2.xml
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL2_regions.txt
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL2_space-MNI152NLin6Asym_2mm.nii.gz
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL2_space-MNI152NLin6Asym_2mm_mask.nii.gz
rapidtide/data/reference/MNI152_T1_1mm_Brain_FAST_seg.nii.gz
rapidtide/data/reference/MNI152_T1_1mm_Brain_Mask.nii.gz
rapidtide/data/reference/MNI152_T1_2mm_Brain_FAST_seg.nii.gz
rapidtide/data/reference/MNI152_T1_2mm_Brain_Mask.nii.gz
rapidtide/data/reference/MNI152_T1_3mm.nii.gz
rapidtide/data/reference/MNI152_T1_3mm_brain_mask.nii.gz
rapidtide/data/reference/slicetimes/HCP-YA_slicetimes.txt
rapidtide/scripts/__init__.py
rapidtide/scripts/adjustoffset.py
rapidtide/scripts/aligntcs.py
rapidtide/scripts/applydlfilter.py
rapidtide/scripts/applyppgproc.py
rapidtide/scripts/atlasaverage.py
rapidtide/scripts/atlastool.py
rapidtide/scripts/calcicc.py
rapidtide/scripts/calctexticc.py
rapidtide/scripts/calcttest.py
rapidtide/scripts/ccorrica.py
rapidtide/scripts/delayvar.py
rapidtide/scripts/diffrois.py
rapidtide/scripts/endtidalproc.py
rapidtide/scripts/fdica.py
rapidtide/scripts/filtnifti.py
rapidtide/scripts/filttc.py
rapidtide/scripts/fingerprint.py
rapidtide/scripts/fixtr.py
rapidtide/scripts/gmscalc.py
rapidtide/scripts/happy.py
rapidtide/scripts/happy2std.py
rapidtide/scripts/happywarp.py
rapidtide/scripts/histnifti.py
rapidtide/scripts/histtc.py
rapidtide/scripts/linfitfilt.py
rapidtide/scripts/localflow.py
rapidtide/scripts/mergequality.py
rapidtide/scripts/pairproc.py
rapidtide/scripts/pairwisemergenifti.py
rapidtide/scripts/physiofreq.py
rapidtide/scripts/pixelcomp.py
rapidtide/scripts/plethquality.py
rapidtide/scripts/polyfitim.py
rapidtide/scripts/proj2flow.py
rapidtide/scripts/rankimage.py
rapidtide/scripts/rapidtide.py
rapidtide/scripts/rapidtide2std.py
rapidtide/scripts/resamplenifti.py
rapidtide/scripts/resampletc.py
rapidtide/scripts/retrolagtcs.py
rapidtide/scripts/retroregress.py
rapidtide/scripts/roisummarize.py
rapidtide/scripts/runqualitycheck.py
rapidtide/scripts/showarbcorr.py
rapidtide/scripts/showhist.py
rapidtide/scripts/showstxcorr.py
rapidtide/scripts/showtc.py
rapidtide/scripts/showxcorr_legacy.py
rapidtide/scripts/showxcorrx.py
rapidtide/scripts/showxy.py
rapidtide/scripts/simdata.py
rapidtide/scripts/spatialdecomp.py
rapidtide/scripts/spatialfit.py
rapidtide/scripts/spatialmi.py
rapidtide/scripts/spectrogram.py
rapidtide/scripts/stupidramtricks.py
rapidtide/scripts/synthASL.py
rapidtide/scripts/tcfrom2col.py
rapidtide/scripts/tcfrom3col.py
rapidtide/scripts/temporaldecomp.py
rapidtide/scripts/testhrv.py
rapidtide/scripts/threeD.py
rapidtide/scripts/tidepool.py
rapidtide/scripts/variabilityizer.py
rapidtide/tests/.coveragerc
rapidtide/tests/__init__.py
rapidtide/tests/cleanposttest
rapidtide/tests/happycomp
rapidtide/tests/matplotlibrc
rapidtide/tests/resethappytargets
rapidtide/tests/resetrapidtidetargets
rapidtide/tests/resettargets
rapidtide/tests/runlocaltest
rapidtide/tests/showdirectories
rapidtide/tests/showkernels
rapidtide/tests/test_aliasedcorrelate.py
rapidtide/tests/test_aligntcs.py
rapidtide/tests/test_calcicc.py
rapidtide/tests/test_cleanregressor.py
rapidtide/tests/test_congrid.py
rapidtide/tests/test_correlate.py
rapidtide/tests/test_corrpass.py
rapidtide/tests/test_delayestimation.py
rapidtide/tests/test_dlfiltertorch.py
rapidtide/tests/test_doresample.py
rapidtide/tests/test_externaltools.py
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rapidtide/tests/test_padvec.py
rapidtide/tests/test_parserfuncs.py
rapidtide/tests/test_phaseanalysis.py
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rapidtide/workflows/__init__.py
rapidtide/workflows/adjustoffset.py
rapidtide/workflows/aligntcs.py
rapidtide/workflows/applydlfilter.py
rapidtide/workflows/applyppgproc.py
rapidtide/workflows/atlasaverage.py
rapidtide/workflows/atlastool.py
rapidtide/workflows/calcSimFuncMap.py
rapidtide/workflows/calctexticc.py
rapidtide/workflows/ccorrica.py
rapidtide/workflows/cleanregressor.py
rapidtide/workflows/delayvar.py
rapidtide/workflows/diffrois.py
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rapidtide/workflows/fdica.py
rapidtide/workflows/filtnifti.py
rapidtide/workflows/filttc.py
rapidtide/workflows/fitSimFuncMap.py
rapidtide/workflows/fixtr.py
rapidtide/workflows/gmscalc.py
rapidtide/workflows/happy.py
rapidtide/workflows/happy2std.py
rapidtide/workflows/happy_parser.py
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rapidtide/workflows/mergequality.py
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rapidtide/workflows/niftistats.py
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rapidtide/workflows/pixelcomp.py
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rapidtide/workflows/showstxcorr.py
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rapidtide/workflows/spatialmi.py
rapidtide/workflows/spectrogram.py
rapidtide/workflows/synthASL.py
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rapidtide/workflows/utils.py
rapidtide/workflows/utils_doc.py
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