.gitignore
.gitmodules
.pre-commit-config.yaml
CLAUDE.md
LICENSE
Makefile
README.md
docker-compose.yml
pyproject.toml
.binder/postBuild
.binder/requirements.txt
.binder/runtime.txt
.devcontainer/devcontainer.json
.github/CODEOWNERS
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.github/workflows/release.yml
docs/changelog/0.5/0.5.0.clog
docs/changelog/0.5/0.5.0.rst
docs/changelog/0.5/Makefile
docs/changelog/0.6/0.6.0.clog
docs/changelog/0.6/0.6.0.rst
docs/changelog/0.6/0.6.1.clog
docs/changelog/0.6/0.6.1.rst
docs/changelog/0.6/0.6.2.clog
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docs/changelog/0.6/0.6.3.clog
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docs/changelog/0.6/0.6.4.clog
docs/changelog/0.6/0.6.4.rst
docs/changelog/0.6/Makefile
docs/extras/vcf_annotator.md
docs/setup_help/m1_mac_setup.md
docs/setup_help/uta_installation.md
misc/githooks/post-checkout
notebooks/getting_started/1_Quick_Start.ipynb
notebooks/getting_started/2_Exploring_the_SeqRepo_DataProxy.ipynb
notebooks/getting_started/3_Basic_Models.ipynb
notebooks/getting_started/4_Exploring_the_AlleleTranslator.ipynb
notebooks/getting_started/5_Exploring_the_CnvTranslator.ipynb
notebooks/getting_started/6_Upcoming_features.ipynb
notebooks/getting_started/README.md
src/ga4gh.vrs.egg-info/PKG-INFO
src/ga4gh.vrs.egg-info/SOURCES.txt
src/ga4gh.vrs.egg-info/dependency_links.txt
src/ga4gh.vrs.egg-info/entry_points.txt
src/ga4gh.vrs.egg-info/requires.txt
src/ga4gh.vrs.egg-info/top_level.txt
src/ga4gh/core/__init__.py
src/ga4gh/core/digests.py
src/ga4gh/core/enderef.py
src/ga4gh/core/identifiers.py
src/ga4gh/core/models.py
src/ga4gh/core/pydantic.py
src/ga4gh/vrs/__init__.py
src/ga4gh/vrs/dataproxy.py
src/ga4gh/vrs/enderef.py
src/ga4gh/vrs/models.py
src/ga4gh/vrs/normalize.py
src/ga4gh/vrs/extras/__init__.py
src/ga4gh/vrs/extras/decorators.py
src/ga4gh/vrs/extras/object_store.py
src/ga4gh/vrs/extras/translator.py
src/ga4gh/vrs/extras/annotator/__init__.py
src/ga4gh/vrs/extras/annotator/cli.py
src/ga4gh/vrs/extras/annotator/vcf.py
src/ga4gh/vrs/utils/__init__.py
src/ga4gh/vrs/utils/hgvs_tools.py
submodules/README.md
tests/conftest.py
tests/test_dataproxy.py
tests/test_vcr.py
tests/test_vrs.py
tests/test_vrs_normalize.py
tests/cassettes/test_data_proxies[rest_dataproxy].yaml
tests/cassettes/test_normalize_allele.yaml
tests/cassettes/test_normalize_clinvar_rle.yaml
tests/cassettes/test_normalize_partial_rle_del_ins.yaml
tests/cassettes/test_vcrtest.yaml
tests/data/seqrepo/latest/aliases.sqlite3
tests/data/seqrepo/latest/sequences/db.sqlite3
tests/data/seqrepo/latest/sequences/2016/0824/050304/1472014984.5124342.fa.bgz
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tests/extras/test_allele_translator.py
tests/extras/test_annotate_vcf.py
tests/extras/test_cnv_translator.py
tests/extras/test_object_store.py
tests/extras/cassettes/test_annotate_vcf_grch37_attrs.yaml
tests/extras/cassettes/test_annotate_vcf_grch38_attrs.yaml
tests/extras/cassettes/test_annotate_vcf_grch38_attrs_altsonly.yaml
tests/extras/cassettes/test_annotate_vcf_grch38_noattrs.yaml
tests/extras/cassettes/test_annotate_vcf_input_validation.yaml
tests/extras/cassettes/test_annotate_vcf_pickle_only.yaml
tests/extras/cassettes/test_annotate_vcf_rle.yaml
tests/extras/cassettes/test_annotate_vcf_vcf_only.yaml
tests/extras/cassettes/test_from_beacon.yaml
tests/extras/cassettes/test_from_gnomad.yaml
tests/extras/cassettes/test_from_hgvs.yaml
tests/extras/cassettes/test_get_vrs_object_invalid_input.yaml
tests/extras/cassettes/test_hgvs[NC_000007.14:g.55181220del-expected2].yaml
tests/extras/cassettes/test_hgvs[NC_000007.14:g.55181230_55181231insGGCT-expected3].yaml
tests/extras/cassettes/test_hgvs[NC_000007.14:g.55181320A>T-expected1].yaml
tests/extras/cassettes/test_hgvs[NC_000013.11:g.32316467dup-expected5].yaml
tests/extras/cassettes/test_hgvs[NC_000013.11:g.32331093_32331094dup-expected4].yaml
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tests/extras/cassettes/test_hgvs[NC_000019.10:g.289464_289465insCACA-expected8].yaml
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tests/extras/cassettes/test_hgvs[NM_001331029.1:c.722A>G-expected6].yaml
tests/extras/cassettes/test_hgvs[NM_181798.1:c.1007G>T-expected7].yaml
tests/extras/cassettes/test_normalize_microsatellite_counts[deletion].yaml
tests/extras/cassettes/test_normalize_microsatellite_counts[identity].yaml
tests/extras/cassettes/test_normalize_microsatellite_counts[insertion].yaml
tests/extras/cassettes/test_reference_allele_rle.yaml
tests/extras/cassettes/test_rle_round_trip_gnomad_spdi.yaml
tests/extras/cassettes/test_rle_seq_limit.yaml
tests/extras/cassettes/test_to_hgvs_iri_ref_keyerror.yaml
tests/extras/cassettes/test_to_spdi.yaml
tests/extras/data/test_rle.vcf
tests/extras/data/test_vcf_expected_altsonly_output.vcf
tests/extras/data/test_vcf_expected_output.vcf
tests/extras/data/test_vcf_expected_output_no_vrs_attrs.vcf
tests/extras/data/test_vcf_input.vcf
tests/validation/test_functions.py
tests/validation/test_models.py
tests/validation/test_schemas.py
vrs-in-a-box/.gitignore
vrs-in-a-box/Dockerfile
vrs-in-a-box/README.md
vrs-in-a-box/run.sh
vrs-in-a-box/seqrepo.sh