LICENCE.txt
LICENSE
MANIFEST.in
README.md
pyproject.toml
proteopy/__init__.py
proteopy.egg-info/PKG-INFO
proteopy.egg-info/SOURCES.txt
proteopy.egg-info/dependency_links.txt
proteopy.egg-info/requires.txt
proteopy.egg-info/top_level.txt
proteopy/ann/__init__.py
proteopy/ann/base_anndata.py
proteopy/ann/proteins.py
proteopy/datasets/__init__.py
proteopy/datasets/karayel_2020.py
proteopy/datasets/williams_2018.py
proteopy/download/__init__.py
proteopy/download/contaminants.py
proteopy/download/karayel_2020.py
proteopy/download/williams_2018.py
proteopy/get/__init__.py
proteopy/get/proteoforms.py
proteopy/get/stat_tests.py
proteopy/pl/__init__.py
proteopy/pl/clustering.py
proteopy/pl/copf.py
proteopy/pl/intensities.py
proteopy/pl/sequence.py
proteopy/pl/stat_tests.py
proteopy/pl/stats.py
proteopy/pp/__init__.py
proteopy/pp/filtering.py
proteopy/pp/imputation.py
proteopy/pp/normalization.py
proteopy/pp/quantification.py
proteopy/pp/stats.py
proteopy/read/__init__.py
proteopy/read/diann.py
proteopy/read/long.py
proteopy/tl/__init__.py
proteopy/tl/clustering.py
proteopy/tl/copf.py
proteopy/tl/stat_tests.py
proteopy/utils/__init__.py
proteopy/utils/anndata.py
proteopy/utils/array.py
proteopy/utils/copf.py
proteopy/utils/data_structures.py
proteopy/utils/functools.py
proteopy/utils/matplotlib.py
proteopy/utils/pandas.py
proteopy/utils/parsers.py
proteopy/utils/stat_tests.py
proteopy/utils/string.py
tests/__init__.py
tests/data/mouse_tissue/fraction_annotation.tsv
tests/data/mouse_tissue/trace_annotation_proteoform-scores_rcopf.tsv
tests/data/mouse_tissue/traces_annotation_cluster-assignment_rcopf.tsv
tests/data/mouse_tissue/traces_correlations_rcopf.tsv
tests/data/mouse_tissue/traces_pre-processed_rcopf.tsv
tests/data/mouse_tissue/traces_pre-processed_trace-annotations_rcopf.tsv
tests/pp/test_filtering.py
tests/pp/test_quantification.py
tests/read/__init__.py
tests/tl/__init__.py
tests/tl/test_copro.py
tests/utils/__init__.py
tests/utils/helpers.py
tests/utils/test_anndata.py
tests/utils/test_data_structures.py
tests/utils/test_parsers.py