Metadata-Version: 2.1
Name: senaite.ast
Version: 1.1.0
Summary: Antibiotic Sensitivity Testing (AST) for SENAITE
Home-page: https://github.com/senaite/senaite.ast
Author: RIDING BYTES & NARALABS
Author-email: senaite@senaite.com
License: GPLv2
Description: Antibiotic Sensitivity Testing (AST) for SENAITE
        ================================================
        
        .. image:: https://img.shields.io/pypi/v/senaite.ast.svg?style=flat-square
            :target: https://pypi.python.org/pypi/senaite.ast
        
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            :target: https://app.travis-ci.com/github/senaite/senaite.ast
        
        .. image:: https://readthedocs.org/projects/pip/badge/
            :target: https://senaiteast.readthedocs.org
        
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            :target: https://github.com/senaite/senaite.ast/pulls
        
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            :target: https://github.com/senaite/senaite.ast/issues
        
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           :target: https://www.senaite.com
        
        
        About
        -----
        
        This add-on enables Antibiotic Sensitivity Testing (AST) for `SENAITE LIMS`_ by
        allowing the user to add analyses to a sample that are specifically designed for
        the measurement of the susceptibility of microorganisms to antibiotics. These
        analyses can be added either by means of pre-defined AST Panels or by direct
        assignment of Antibiotics and Microorganisms through a matrix.
        
        `senaite.ast`_ also incorporates a default analysis for the identification of
        microorganisms present in a given sample. Once microorganisms are identified by
        means of this identification analysis, the system automatically populates the
        list of available AST Panels for selection with those that fit better with the
        identified microorganism(s).
        
        Resistance analyses are qualitative and the supported results are in accordance
        with the `new definitions of susceptibility testing categories by EUCAST 2019`_:
        
        - S: Susceptible, standard dosing regimen
        - I: Susceptible, increased exposure
        - R: Resistant
        
        Although user can configure AST Panels for the automatic addition of analyses
        for the capture of diameter of the zone of inhibition, the system does not
        automatically calculate the qualitative results based on the diameter of zone
        and the minimum inhibitory concentrations (MICs). However, system can infere
        the susceptibility testing category automatically based on pre-defined
        Breakpoints Tables, along with the diameter of the inhibitory zone or the MIC
        value.
        
        Once installed, this add-on allows the laboratory to:
        
        * Maintain microorganisms (via `senaite.microorganism`_)
        * Maintain antibiotics and antibiotic classes (via `senaite.abx`_)
        * Maintain pre-defined AST Panels
        * Maintain pre-defined Breakpoints Tables
        * Analysis for the identification of microorganisms
        * Assignment of pre-defined AST Panels to a sample
        * Sample-level customization of AST Panel
        * Selective reporting of resistance results
        * Support for and selective reporting of extrapolated antibiotics
        
        
        Documentation
        -------------
        
        * https://senaiteast.readthedocs.io
        
        
        Contribute
        ----------
        
        We want contributing to SENAITE.AST to be fun, enjoyable, and educational
        for anyone, and everyone. This project adheres to the `Contributor Covenant`_.
        
        By participating, you are expected to uphold this code. Please report
        unacceptable behavior.
        
        Contributions go far beyond pull requests and commits. Although we love giving
        you the opportunity to put your stamp on SENAITE.AST, we also are thrilled
        to receive a variety of other contributions.
        
        Please, read `Contributing to senaite.ast document`_.
        
        If you wish to contribute with translations, check the project site on `Transifex`_.
        
        
        License
        -------
        
        **SENAITE.AST** Copyright (C) 2020-2024 RIDING BYTES & NARALABS
        
        This program is free software; you can redistribute it and/or modify it under
        the terms of the `GNU General Public License version 2`_ as published
        by the Free Software Foundation.
        
        This program is distributed in the hope that it will be useful,
        but WITHOUT ANY WARRANTY; without even the implied warranty of
        MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
        GNU General Public License for more details.
        
        
        .. Links
        
        .. _SENAITE LIMS: https://www.senaite.com
        .. _senaite.ast: https://pypi.org/project/senaite.ast
        .. _new definitions of susceptibility testing categories by EUCAST 2019: https://www.eucast.org/newsiandr/
        .. _senaite.microorganism: https://pypi.org/project/senaite.microorganism
        .. _senaite.abx: https://pypi.org/project/senaite.abx
        .. _Contributor Covenant: https://github.com/senaite/senaite.ast/blob/master/CODE_OF_CONDUCT.md
        .. _Contributing to senaite.ast document: https://github.com/senaite/senaite.ast/blob/master/CONTRIBUTING.md
        .. _Transifex: https://www.transifex.com/senaite/senaite-ast
        .. _Community site: https://community.senaite.org/
        .. _Gitter channel: https://gitter.im/senaite/Lobby
        .. _Users list: https://sourceforge.net/projects/senaite/lists/senaite-users
        .. _GNU General Public License version 2: https://www.gnu.org/licenses/old-licenses/gpl-2.0.txt
        
        
        
        Changelog
        =========
        
        1.1.0 (2024-01-04)
        ------------------
        
        - #31 Support lower than, greater than and fractions for MIC values
        - #30 Fix sizes for numeric fields are too small
        - #26 Fix Sensitivity result is not updated when selective reporting is missing
        - #25 Do not allow to "submit" AST analyses with no result save
        - #23 Fix AST calculation does not work when extrapolated antibiotics
        - #22 Hide Unit and display Submitter before Captured in AST entry
        - #21 Fix AST entry is empty when analyses categorization for sample is checked
        - #20 Compatibility with senaite.app.listing#87
        
        1.0.0 (2022-06-18)
        ------------------
        
        - #17 Selective reporting for extrapolated antibiotics
        - #15 Support for extrapolated antibiotics
        - #13 Allow addition of new antibiotics to submitted/verified AST analyses
        - #12 Negative values for diameter and zone size tests not permitted
        - #12 Do not allow to submit AST analyses with empties
        - #11 Better styling of AST Panel selector in Sample view
        - #10 Allow to remove retracted AST analyses retests
        - Initial Release
        
Keywords: senaite,lims,opensource
Platform: UNKNOWN
Classifier: Framework :: Plone
Classifier: Framework :: Zope2
Classifier: Programming Language :: Python
Classifier: License :: OSI Approved :: GNU General Public License v2 (GPLv2)
Provides-Extra: test
