.gitignore
AI_DIRECTIVE.md
LICENSE
README.md
pyproject.toml
tapdb_activate.sh
tapdb_deactivate.sh
.github/workflows/ci.yml
admin/__init__.py
admin/auth.py
admin/cognito.py
admin/main.py
admin/api/__init__.py
admin/static/css/style.css
admin/static/js/graph.js
admin/templates/base.html
admin/templates/change_password.html
admin/templates/create_instance.html
admin/templates/graph.html
admin/templates/index.html
admin/templates/instances_list.html
admin/templates/lineages_list.html
admin/templates/login.html
admin/templates/object_detail.html
admin/templates/signup.html
admin/templates/templates_list.html
bin/fresh_start.sh
bin/nuke_all.sh
bin/nuke_all.sh~
config/_metadata.json
config/tapdb-config-example.yaml
config/action/core.json
config/actor/actor.json
config/content/nucleic-acid.json
config/content/specimen.json
config/generic/generic.json
config/workflow/assay.json
config/workflow_step/queue.json
daylily_tapdb/__init__.py
daylily_tapdb/_version.py
daylily_tapdb/connection.py
daylily_tapdb/euid.py
daylily_tapdb/passwords.py
daylily_tapdb.egg-info/PKG-INFO
daylily_tapdb.egg-info/SOURCES.txt
daylily_tapdb.egg-info/dependency_links.txt
daylily_tapdb.egg-info/entry_points.txt
daylily_tapdb.egg-info/requires.txt
daylily_tapdb.egg-info/top_level.txt
daylily_tapdb/actions/__init__.py
daylily_tapdb/actions/dispatcher.py
daylily_tapdb/aurora/__init__.py
daylily_tapdb/aurora/cfn_template.py
daylily_tapdb/aurora/config.py
daylily_tapdb/aurora/connection.py
daylily_tapdb/aurora/schema_deployer.py
daylily_tapdb/aurora/stack_manager.py
daylily_tapdb/aurora/templates/aurora-postgres.json
daylily_tapdb/cli/__init__.py
daylily_tapdb/cli/__main__.py
daylily_tapdb/cli/aurora.py
daylily_tapdb/cli/cognito.py
daylily_tapdb/cli/db.py
daylily_tapdb/cli/db_config.py
daylily_tapdb/cli/pg.py
daylily_tapdb/cli/user.py
daylily_tapdb/factory/__init__.py
daylily_tapdb/factory/instance.py
daylily_tapdb/models/__init__.py
daylily_tapdb/models/audit.py
daylily_tapdb/models/base.py
daylily_tapdb/models/instance.py
daylily_tapdb/models/lineage.py
daylily_tapdb/models/template.py
daylily_tapdb/templates/__init__.py
daylily_tapdb/templates/manager.py
daylily_tapdb/validation/__init__.py
daylily_tapdb/validation/instantiation_layouts.py
schema/tapdb_schema.sql
schema/migrations_legacy/001_rename_type_hierarchy_fields.sql
tests/__init__.py
tests/conftest.py
tests/test_admin_cognito.py
tests/test_admin_instance_creation.py
tests/test_aurora_cfn_template.py
tests/test_aurora_cli.py
tests/test_aurora_config.py
tests/test_aurora_connection.py
tests/test_aurora_schema_deployer.py
tests/test_aurora_stack_manager.py
tests/test_cli.py
tests/test_connection_unit.py
tests/test_db_safety.py
tests/test_euid.py
tests/test_instance_factory_unit.py
tests/test_instance_lineage_helpers.py
tests/test_integration.py
tests/test_models.py
tests/test_passwords.py
tests/test_template_manager.py