.coveragerc
.gitignore
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AUTHORS.rst
CHANGELOG.rst
LICENSE.txt
README.rst
profiling test mother_cells.py
profiling test.py
profiling.prof
profiling_mother.prof
pyproject.toml
setup.cfg
setup.py
tox.ini
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.github/workflows/python-publish.yml
data/runs.tar
docs/Makefile
docs/analysis.rst
docs/atom_generation.rst
docs/authors.rst
docs/changelog.rst
docs/conf.py
docs/datafed.rst
docs/examples.rst
docs/index.rst
docs/license.rst
docs/readme.rst
docs/requirements.txt
docs/_static/.gitignore
docs/_static/images/Colonies_over_time.png
docs/_static/images/average_nutrients.png
docs/_static/images/biomass_vs_time.png
docs/_static/images/growth_rate_div.png
docs/_static/images/growth_rate_time.png
docs/_static/images/testcolony.png
docs/_static/images/total_biomass_vs_time.png
notebooks/Colonies over time.png
notebooks/cell ancestry - Copy.ipynb
notebooks/cell ancestry.ipynb
notebooks/dask testing.ipynb
notebooks/dasktest.py
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notebooks/neighbor-fitness.ipynb
notebooks/neighbor.ipynb
src/nufeb_tools/__init__.py
src/nufeb_tools/generate_atom.py
src/nufeb_tools/generate_atom_dev.py
src/nufeb_tools/maketestplots.py
src/nufeb_tools/playbook.yml
src/nufeb_tools/plot.py
src/nufeb_tools/storage.py
src/nufeb_tools/utils.py
src/nufeb_tools/whole_culture_growth_curves.py
src/nufeb_tools.egg-info/PKG-INFO
src/nufeb_tools.egg-info/SOURCES.txt
src/nufeb_tools.egg-info/dependency_links.txt
src/nufeb_tools.egg-info/entry_points.txt
src/nufeb_tools.egg-info/not-zip-safe
src/nufeb_tools.egg-info/requires.txt
src/nufeb_tools.egg-info/top_level.txt
src/nufeb_tools/templates/__init__.py
src/nufeb_tools/templates/bacillus.txt
src/nufeb_tools/templates/inputscript.txt
src/nufeb_tools/templates/local.txt
src/nufeb_tools/templates/slurm.txt
src/nufeb_tools/templates/slurm_dev.txt
tests/conftest.py
tests/test_atom_gen.py
tests/test_plotting.py
tests/test_utils.py