.gitignore
.pre-commit-config.yaml
AGENTS.md
README.md
activate
cluex.yaml
daylily-ursa_t0-1-16.tgz
iam-policy.json
iam-policy.json.original
pyproject.toml
ursa-conformance-directive.md
.github/workflows/ci.yml
bin/daylily-export-fsx-to-s3
bin/daylily-export-fsx-to-s3-from-local
bin/daylily-stage-samples-from-local-to-headnode
bin/daylily-workset-api
bin/daylily-workset-metrics
bin/daylily-workset-report
bin/ursa
config/daylily-workset-monitor.yaml
config/dayu_env.yaml
config/ecosystem-versions.json
config/tapdb-config-ursa.yaml
config/ursa-config.example.yaml
config/ursa_env.yaml
config/workset-monitor-config.template.yaml
config/workset-monitor-config.yaml
config/tapdb_templates/ursa/templates.json
daylib_ursa/__init__.py
daylib_ursa/analysis_store.py
daylib_ursa/anomalies.py
daylib_ursa/atlas_result_client.py
daylib_ursa/bloom_resolver_client.py
daylib_ursa/cluster_job_worker.py
daylib_ursa/cluster_jobs.py
daylib_ursa/cluster_service.py
daylib_ursa/config.py
daylib_ursa/dewey_client.py
daylib_ursa/domain_access.py
daylib_ursa/exceptions.py
daylib_ursa/export_fsx.py
daylib_ursa/file_metadata.py
daylib_ursa/gui_app.py
daylib_ursa/observability.py
daylib_ursa/pipeline_status.py
daylib_ursa/pricing_monitor.py
daylib_ursa/pricing_state.py
daylib_ursa/rate_limiting.py
daylib_ursa/resource_store.py
daylib_ursa/s3_utils.py
daylib_ursa/security.py
daylib_ursa/stage_samples.py
daylib_ursa/tapdb_mount.py
daylib_ursa/tapdb_templates.py
daylib_ursa/ursa_config.py
daylib_ursa/user_preferences.py
daylib_ursa/workset_api.py
daylib_ursa/workset_api_cli.py
daylib_ursa/workset_diagnostics.py
daylib_ursa/auth/__init__.py
daylib_ursa/auth/dependencies.py
daylib_ursa/auth/rbac.py
daylib_ursa/auth/tokens.py
daylib_ursa/cli/__init__.py
daylib_ursa/cli/db.py
daylib_ursa/cli/env.py
daylib_ursa/cli/integrations.py
daylib_ursa/cli/monitor.py
daylib_ursa/cli/quality.py
daylib_ursa/cli/server.py
daylib_ursa/cli/test.py
daylib_ursa/ephemeral_cluster/__init__.py
daylib_ursa/ephemeral_cluster/job_runner.py
daylib_ursa/ephemeral_cluster/runner.py
daylib_ursa/gui/static/app.js
daylib_ursa/gui/static/favicon.svg
daylib_ursa/gui/static/main.css
daylib_ursa/gui/static/portal.js
daylib_ursa/gui/static/styles.css
daylib_ursa/gui/templates/admin_anomalies.html
daylib_ursa/gui/templates/admin_client_detail.html
daylib_ursa/gui/templates/admin_clients.html
daylib_ursa/gui/templates/admin_tokens.html
daylib_ursa/gui/templates/artifacts.html
daylib_ursa/gui/templates/base.html
daylib_ursa/gui/templates/buckets.html
daylib_ursa/gui/templates/buckets_browse.html
daylib_ursa/gui/templates/cluster_detail.html
daylib_ursa/gui/templates/cluster_job_detail.html
daylib_ursa/gui/templates/clusters.html
daylib_ursa/gui/templates/dashboard.html
daylib_ursa/gui/templates/login.html
daylib_ursa/gui/templates/observability.html
daylib_ursa/gui/templates/shell.html
daylib_ursa/gui/templates/usage.html
daylib_ursa/gui/templates/analyses/detail.html
daylib_ursa/gui/templates/analyses/list.html
daylib_ursa/gui/templates/manifests/detail.html
daylib_ursa/gui/templates/manifests/index.html
daylib_ursa/gui/templates/tokens/detail.html
daylib_ursa/gui/templates/tokens/list.html
daylib_ursa/gui/templates/worksets/detail.html
daylib_ursa/gui/templates/worksets/list.html
daylib_ursa/gui/templates/worksets/new.html
daylib_ursa/integrations/__init__.py
daylib_ursa/integrations/dewey_client.py
daylib_ursa/integrations/tapdb_runtime.py
daylib_ursa/routes/__init__.py
daylib_ursa/search/__init__.py
daylib_ursa/tapdb_graph/__init__.py
daylib_ursa/tapdb_graph/backend.py
daylily_ursa.egg-info/PKG-INFO
daylily_ursa.egg-info/SOURCES.txt
daylily_ursa.egg-info/dependency_links.txt
daylily_ursa.egg-info/entry_points.txt
daylily_ursa.egg-info/requires.txt
daylily_ursa.egg-info/top_level.txt
docs/GOOGLE_OAUTH_DEFAULT.md
docs/IAM_SETUP_GUIDE.md
docs/MULTI_REGION.md
docs/README.md
docs/WORKSET_STATE_DIAGRAM.md
docs/tapdb_mount_execplan.md
docs/ursa_atlas_return_contract.md
scripts/bootstrap_biospecimen_templates.py
scripts/drop_daylily_tables.py
scripts/setup_cognito_google_default.sh
tests/__init__.py
tests/conftest.py
tests/test_activation_metadata.py
tests/test_admin_gui_and_cluster_routes.py
tests/test_analysis_ingest.py
tests/test_analysis_store_relationships.py
tests/test_anomalies.py
tests/test_auth_dependencies.py
tests/test_bloom_resolver_client.py
tests/test_cli_db_tapdb.py
tests/test_cli_server_helpers.py
tests/test_cluster_job_worker.py
tests/test_console_scripts.py
tests/test_deployment_chrome.py
tests/test_dewey_client.py
tests/test_dewey_workset_api.py
tests/test_domain_access.py
tests/test_file_metadata.py
tests/test_observability_contract.py
tests/test_result_return.py
tests/test_stage_samples_additional_helpers.py
tests/test_stage_samples_helpers.py
tests/test_tapdb_backend.py
tests/test_tapdb_mount.py
tests/test_user_tokens_api.py
tests/test_v1_api_contracts.py
tests/test_workset_api_cli_helpers.py
tests/test_worksets_api.py
tests/e2e/README.md
tests/e2e/__init__.py
tests/e2e/auth_helpers.py
tests/e2e/cognito_test_user.py
tests/e2e/conftest.py
tests/e2e/test_auth_e2e.py